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2O6V
Biol. Unit 1
Info
Asym.Unit (106 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (52 KB)
Biol.Unit 3 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE AND SOLUTION NMR STUDIES OF LYS48-LINKED TETRAUBIQUITIN AT NEUTRAL PH
Authors
:
M. J. Eddins, C. Wolberger
Date
:
08 Dec 06 (Deposition) - 13 Feb 07 (Release) - 27 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Ubiquitin, Tetraubiquitin, Polyubiquitin, Lys48-Linked, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Eddins, R. Varadan, D. Fushman, C. M. Pickart, C. Wolberger
Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph
J. Mol. Biol. V. 367 204 2007
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
1b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
2a: L-THIALYSINE (SLZa)
2b: L-THIALYSINE (SLZb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2
SLZ
1
Mod. Amino Acid
L-THIALYSINE
3
SO4
3
Ligand/Ion
SULFATE ION
[
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]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:42 , GLN A:49 , ARG A:72 , ARG B:142 , GLN B:149 , ARG B:172
BINDING SITE FOR RESIDUE SO4 A 801
2
AC2
SOFTWARE
GLY B:110 , LYS B:111 , THR B:112 , ARG C:254
BINDING SITE FOR RESIDUE SO4 B 802
3
AC3
SOFTWARE
ARG A:54 , THR D:312
BINDING SITE FOR RESIDUE SO4 D 803
4
AC5
SOFTWARE
LYS B:129
BINDING SITE FOR RESIDUE MES B 901
5
AC6
SOFTWARE
PHE D:304 , LYS D:306 , THR D:366 , HIS D:368
BINDING SITE FOR RESIDUE MES D 902
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 32)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:1-75,B:101-176,C:201-276,D:301-3...)
2: UBIQUITIN_1 (A:27-52,B:127-152,C:227-252,D:327-...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RS27A_HUMAN
1-76
4
A:1-75
B:101-176
C:201-276
D:301-376
-
-
-
RL40_HUMAN
1-76
4
A:1-75
B:101-176
C:201-276
D:301-376
-
-
-
UBB_HUMAN
1-76
77-152
153-228
4
-
-
A:1-75
B:101-176
C:201-276
D:301-376
-
-
-
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
4
-
-
-
-
-
-
-
-
A:1-75
B:101-176
C:201-276
D:301-376
-
-
-
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_HUMAN
27-52
4
A:27-52
B:127-152
C:227-252
D:327-352
-
-
-
-
RL40_HUMAN
27-52
4
A:27-52
B:127-152
C:227-252
D:327-352
-
-
-
-
UBB_HUMAN
27-52
103-128
179-204
4
-
-
A:27-52
B:127-152
C:227-252
D:327-352
-
-
-
-
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
4
-
-
-
-
-
-
-
-
A:27-52
B:127-152
C:227-252
D:327-352
-
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2o6vb_ (B:)
1b: SCOP_d2o6vf_ (F:)
2a: SCOP_d2o6va_ (A:)
2b: SCOP_d2o6vc_ (C:)
2c: SCOP_d2o6vd1 (D:301-376)
2d: SCOP_d2o6ve_ (E:)
2e: SCOP_d2o6vg_ (G:)
2f: SCOP_d2o6vh_ (H:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
automated matches
(80)
Human (Homo sapiens) [TaxId: 9606]
(62)
1a
d2o6vb_
B:
1b
d2o6vf_
F:
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
2a
d2o6va_
A:
2b
d2o6vc_
C:
2c
d2o6vd1
D:301-376
2d
d2o6ve_
E:
2e
d2o6vg_
G:
2f
d2o6vh_
H:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2o6vC00 (C:201-276)
1b: CATH_2o6vD00 (D:301-376)
1c: CATH_2o6vH00 (H:702-776)
1d: CATH_2o6vB00 (B:101-176)
1e: CATH_2o6vF00 (F:501-576)
1f: CATH_2o6vG00 (G:601-676)
1g: CATH_2o6vA00 (A:1-75)
1h: CATH_2o6vE00 (E:401-475)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
2o6vC00
C:201-276
1b
2o6vD00
D:301-376
1c
2o6vH00
H:702-776
1d
2o6vB00
B:101-176
1e
2o6vF00
F:501-576
1f
2o6vG00
G:601-676
1g
2o6vA00
A:1-75
1h
2o6vE00
E:401-475
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (106 KB)
Header - Asym.Unit
Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
Biol.Unit 2 (52 KB)
Header - Biol.Unit 2
Biol.Unit 3 (53 KB)
Header - Biol.Unit 3
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