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2O6H
Biol. Unit 2
Info
Asym.Unit (121 KB)
Biol.Unit 1 (115 KB)
Biol.Unit 2 (227 KB)
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(1)
Title
:
LUMAZINE SYNTHASE RIBH1 FROM BRUCELLA MELITENSIS (GENE BMEI1187, SWISS-PROT ENTRY Q8YGH2) COMPLEXED WITH INHIBITOR 5-NITRO-6-(D-RIBITYLAMINO)-2,4(1H,3H) PYRIMIDINEDIONE
Authors
:
S. Klinke, V. Zylberman, H. R. Bonomi, I. Haase, B. G. Guimaraes, B. C. Br A. Bacher, M. Fischer, F. A. Goldbaum
Date
:
07 Dec 06 (Deposition) - 14 Aug 07 (Release) - 16 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: A,B,C,D,E (2x)
Keywords
:
Lumazine Synthase, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Klinke, V. Zylberman, H. R. Bonomi, I. Haase, B. G. Guimaraes, B. C. Braden, A. Bacher, M. Fischer, F. A. Goldbaum
Structural And Kinetic Properties Of Lumazine Synthase Isoenzymes In The Order Rhizobiales
J. Mol. Biol. V. 373 664 2007
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIa)
2b: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIb)
2c: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIc)
2d: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INId)
2e: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
INI
10
Mod. Residue
5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:67 , GLU A:73 , ALA E:67 , GLU E:73
BINDING SITE FOR RESIDUE CA A 301
02
AC2
SOFTWARE
GLU A:124
BINDING SITE FOR RESIDUE CA A 302
03
AC3
SOFTWARE
ALA B:67 , GLU B:73 , ALA D:67 , GLU D:73
BINDING SITE FOR RESIDUE CA B 303
04
AC4
SOFTWARE
ALA C:67 , GLU C:73
BINDING SITE FOR RESIDUE CA C 304
05
AC5
SOFTWARE
HOH A:404 , GLU C:124
BINDING SITE FOR RESIDUE CA C 305
06
AC6
SOFTWARE
ASP D:24 , ASP D:25 , ASP D:28 , HOH D:484
BINDING SITE FOR RESIDUE CA D 306
07
AC7
SOFTWARE
PHE A:22 , TYR A:23 , GLY A:52 , ALA A:53 , LEU A:54 , GLU A:55 , THR A:82 , VAL A:83 , HIS A:90 , VAL A:94 , HOH A:403 , ASN E:115 , PHE E:140
BINDING SITE FOR RESIDUE INI A 201
08
AC8
SOFTWARE
ASN A:115 , PHE A:140 , PHE B:22 , TYR B:23 , GLY B:52 , ALA B:53 , LEU B:54 , GLU B:55 , THR B:82 , VAL B:83 , ILE B:84 , HIS B:90 , VAL B:94 , HOH B:422
BINDING SITE FOR RESIDUE INI B 202
09
AC9
SOFTWARE
GLY B:114 , ASN B:115 , PHE B:140 , ALA B:144 , PHE C:22 , TYR C:23 , GLY C:52 , ALA C:53 , LEU C:54 , GLU C:55 , THR C:82 , VAL C:83 , ILE C:84 , HIS C:90 , VAL C:94 , HOH C:438
BINDING SITE FOR RESIDUE INI C 203
10
BC1
SOFTWARE
ASN C:115 , PHE C:140 , PHE D:22 , TYR D:23 , GLY D:52 , ALA D:53 , LEU D:54 , GLU D:55 , THR D:82 , VAL D:83 , ILE D:84 , HIS D:90 , VAL D:94
BINDING SITE FOR RESIDUE INI D 204
11
BC2
SOFTWARE
ASN D:115 , PHE D:140 , PHE E:22 , TYR E:23 , GLY E:52 , ALA E:53 , LEU E:54 , GLU E:55 , THR E:82 , VAL E:83 , ILE E:84 , HIS E:90 , VAL E:94
BINDING SITE FOR RESIDUE INI E 205
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_2o6hA00 (A:11-157)
1b: CATH_2o6hB00 (B:11-157)
1c: CATH_2o6hD00 (D:11-157)
1d: CATH_2o6hE00 (E:11-157)
1e: CATH_2o6hC00 (C:12-157)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.960, no name defined]
(36)
Brucella melitensis. Organism_taxid: 29459.
(1)
1a
2o6hA00
A:11-157
1b
2o6hB00
B:11-157
1c
2o6hD00
D:11-157
1d
2o6hE00
E:11-157
1e
2o6hC00
C:12-157
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_DMRL_synthase_2o6hE01 (E:11-155)
1b: PFAM_DMRL_synthase_2o6hE02 (E:11-155)
1c: PFAM_DMRL_synthase_2o6hE03 (E:11-155)
1d: PFAM_DMRL_synthase_2o6hE04 (E:11-155)
1e: PFAM_DMRL_synthase_2o6hE05 (E:11-155)
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Clan
:
no clan defined [family: DMRL_synthase]
(19)
Family
:
DMRL_synthase
(19)
Brucella melitensis
(1)
1a
DMRL_synthase-2o6hE01
E:11-155
1b
DMRL_synthase-2o6hE02
E:11-155
1c
DMRL_synthase-2o6hE03
E:11-155
1d
DMRL_synthase-2o6hE04
E:11-155
1e
DMRL_synthase-2o6hE05
E:11-155
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Asym.Unit (121 KB)
Header - Asym.Unit
Biol.Unit 1 (115 KB)
Header - Biol.Unit 1
Biol.Unit 2 (227 KB)
Header - Biol.Unit 2
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