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2O5Z
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (151 KB)
Biol.Unit 3 (152 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE 1E9 LEUH47TRP/ARGH100TRP FAB 5-BETA-ANDROSTANE-3,17-DIONE COMPLEX
Authors
:
P. Verdino, I. A. Wilson
Date
:
06 Dec 06 (Deposition) - 18 Dec 07 (Release) - 25 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : H,L
Biol. Unit 1: H,L (1x)
Biol. Unit 2: H,L (2x)
Biol. Unit 3: H,L (2x)
Keywords
:
Immunoglobulin, Chimeric Fab, Antibody Engineering, Evolution Of Ligand Recognition, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Verdino, C. Aldag, D. Hilvert, I. A. Wilson
Closely Related Antibody Receptors Exploit Fundamentally Different Strategies For Steroid Recognition.
Proc. Natl. Acad. Sci. Usa V. 105 11725 2008
[
close entry info
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: 5-BETA-ANDROSTANE-3,17-DIONE (ANOa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANO
1
Ligand/Ion
5-BETA-ANDROSTANE-3,17-DIONE
2
SO4
23
Ligand/Ion
SULFATE ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO L:8 , LEU L:9 , SER L:10 , SER L:156
BINDING SITE FOR RESIDUE SO4 L 302
02
AC2
SOFTWARE
GLN L:27 , SER L:27A
BINDING SITE FOR RESIDUE SO4 L 304
03
AC3
SOFTWARE
SER L:52 , ASN L:53 , ARG L:54 , ASP L:60 , LYS L:188
BINDING SITE FOR RESIDUE SO4 L 305
04
AC4
SOFTWARE
HIS L:93 , PHE L:94
BINDING SITE FOR RESIDUE SO4 L 308
05
AC5
SOFTWARE
LYS H:13 , SER H:115 , HOH H:360 , SER L:202
BINDING SITE FOR RESIDUE SO4 L 311
06
AC6
SOFTWARE
PRO L:59 , ARG L:61 , GLU L:81
BINDING SITE FOR RESIDUE SO4 L 312
07
AC7
SOFTWARE
GLN H:105 , GLN L:42 , SER L:43 , LYS L:45 , HOH L:390 , HOH L:401 , HOH L:402
BINDING SITE FOR RESIDUE SO4 L 314
08
AC8
SOFTWARE
GLU H:56 , SER H:57 , ARG L:211
BINDING SITE FOR RESIDUE SO4 L 316
09
AC9
SOFTWARE
GLY H:169 , HIS H:172 , SO4 H:317 , ASN L:138 , ASP L:170 , HOH L:350
BINDING SITE FOR RESIDUE SO4 L 319
10
BC1
SOFTWARE
SER L:114 , ASN L:138 , HOH L:327 , HOH L:407
BINDING SITE FOR RESIDUE SO4 L 322
11
BC2
SOFTWARE
TYR H:27 , MET H:28 , TYR H:32 , HOH H:337
BINDING SITE FOR RESIDUE SO4 H 301
12
BC3
SOFTWARE
GLN H:179 , SER H:180 , HOH H:357 , GLN L:160
BINDING SITE FOR RESIDUE SO4 H 303
13
BC4
SOFTWARE
VAL H:2 , MET H:28 , ASN H:31 , ARG H:94 , TYR H:102
BINDING SITE FOR RESIDUE SO4 H 306
14
BC5
SOFTWARE
ASN H:84 , SER H:112 , SER H:113 , HOH H:327 , HOH H:344 , HOH H:398 , ARG L:108 , ALA L:111
BINDING SITE FOR RESIDUE SO4 H 307
15
BC6
SOFTWARE
ASP H:220 , LYS H:221 , LYS H:222
BINDING SITE FOR RESIDUE SO4 H 309
16
BC7
SOFTWARE
GLY H:118
BINDING SITE FOR RESIDUE SO4 H 310
17
BC8
SOFTWARE
GLU H:16 , THR H:17
BINDING SITE FOR RESIDUE SO4 H 313
18
BC9
SOFTWARE
ARG H:66 , LYS H:83 , GLU H:85
BINDING SITE FOR RESIDUE SO4 H 315
19
CC1
SOFTWARE
SER H:168 , GLY H:169 , HOH H:380 , HOH H:410 , LYS L:169 , SO4 L:319
BINDING SITE FOR RESIDUE SO4 H 317
20
CC2
SOFTWARE
LYS H:83 , ASN H:84 , GLU H:85 , HOH H:373
BINDING SITE FOR RESIDUE SO4 H 318
21
CC3
SOFTWARE
GLN H:81 , ASN L:210
BINDING SITE FOR RESIDUE SO4 H 320
22
CC4
SOFTWARE
GLU H:72 , THR H:73 , SER H:74
BINDING SITE FOR RESIDUE SO4 H 321
23
CC5
SOFTWARE
SER H:7 , GLY H:8 , LYS H:213 , HOH H:394
BINDING SITE FOR RESIDUE SO4 H 323
24
CC6
SOFTWARE
ASN H:35 , TRP H:50 , GLY H:95 , TRP H:100 , ASN L:28 , SER L:91
BINDING SITE FOR RESIDUE ANO H 501
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_066403 (W148R, chain L, )
2: VAR_003897 (V191L, chain L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_066403
W
40
R
IGKC_HUMAN
Disease (IGKCD)
---
L
W
148
R
2
UniProt
VAR_003897
V
83
L
IGKC_HUMAN
Unclassified
---
L
V
191
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:192-198)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_HUMAN
85-91
1
L:192-198
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2o5zl2 (L:108-213)
2a: SCOP_d2o5zl1 (L:1-107)
View:
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Classes
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)
(
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Folds
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)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d2o5zl2
L:108-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Mouse (Mus musculus) [TaxId: 10090]
(112)
2a
d2o5zl1
L:1-107
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2o5zL02 (L:108-211)
1b: CATH_2o5zH02 (H:114-227)
1c: CATH_2o5zL01 (L:1-107)
1d: CATH_2o5zH01 (H:1-113)
View:
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(
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Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse, human (Mus musculus, homo sapiens)
(20)
1a
2o5zL02
L:108-211
1b
2o5zH02
H:114-227
1c
2o5zL01
L:1-107
1d
2o5zH01
H:1-113
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
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Protein
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All Atoms
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Protein & NOT Site
Protein & NOT PROSITE
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Asymmetric Unit 1
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Asym.Unit (84 KB)
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Biol.Unit 3 (152 KB)
Header - Biol.Unit 3
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