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2O52
Biol. Unit 2
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Asym.Unit (62 KB)
Biol.Unit 1 (29 KB)
Biol.Unit 2 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RAB4B IN COMPLEX WITH GDP
Authors
:
H. Zhu, W. Tempel, J. Wang, Y. Shen, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)
Date
:
05 Dec 06 (Deposition) - 19 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
G-Protein, Rab, Gdp, Structural Genomics, Structural Genomics Consortium, Sgc, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zhu, W. Tempel, J. Wang, Y. Shen, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of Human Rab4B In Complex With Gdp
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: UNKNOWN ATOM OR ION (UNXa)
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No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
UNX
-1
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(4, 4)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
SER B:22 , GDP B:601 , HOH B:604 , HOH B:605 , HOH B:606 , HOH B:607
BINDING SITE FOR RESIDUE MG B 602
2
AC5
SOFTWARE
GLY A:53 , GLY A:54 , LYS A:55 , SER B:16 , GLY B:18 , THR B:19 , GLY B:20 , LYS B:21 , SER B:22 , CYS B:23 , ARG B:69 , ASN B:121 , LYS B:122 , ASP B:124 , LEU B:125 , SER B:151 , ALA B:152 , LEU B:153 , MG B:602 , BME B:603 , HOH B:604 , HOH B:606
BINDING SITE FOR RESIDUE GDP B 601
3
AC6
SOFTWARE
CYS B:23 , GDP B:601
BINDING SITE FOR RESIDUE BME B 603
4
AC7
SOFTWARE
HOH A:1023 , ASN B:157
BINDING SITE FOR RESIDUE UNX A 1003
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2o52a_ (A:)
1b: SCOP_d2o52b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
1a
d2o52a_
A:
1b
d2o52b_
B:
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CATH Domains
(0, 0)
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ras_2o52B01 (B:10-171)
1b: PFAM_Ras_2o52B02 (B:10-171)
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)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-2o52B01
B:10-171
1b
Ras-2o52B02
B:10-171
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Chain B
Asymmetric Unit 1
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Asym.Unit (62 KB)
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