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2O4U
Asym. Unit
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Asym.Unit (66 KB)
Biol.Unit 1 (119 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MAMMALIAN DIMERIC DIHYDRODIOL DEHYDROGENASE
Authors
:
V. Carbone, O. El-Kabbani
Date
:
04 Dec 06 (Deposition) - 31 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : X
Biol. Unit 1: X (2x)
Keywords
:
Nadp-Binding Rossmann-Fold Domain, Predominantly Anti-Parallel Beta Sheet, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
V. Carbone, S. Endo, R. Sumii, R. P. Chung, T. Matsunaga, A. Hara, O. El-Kabbani
Structures Of Dimeric Dihydrodiol Dehydrogenase Apoenzyme And Inhibitor Complex: Probing The Subunit Interface With Site-Directed Mutagenesis.
Proteins V. 70 176 2008
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: GLYCEROL (GOLa)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
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Label:
No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
GOL
1
Ligand/Ion
GLYCEROL
3
PO4
7
Ligand/Ion
PHOSPHATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER X:1009 , VAL X:1010 , ALA X:1036 , ARG X:1037 , ARG X:1041 , TYR X:1058 , PO4 X:1336
BINDING SITE FOR RESIDUE PO4 X 1335
2
AC2
SOFTWARE
HOH X:278 , HOH X:316 , SER X:1009 , GLY X:1011 , ARG X:1041 , GLY X:1073 , PO4 X:1335
BINDING SITE FOR RESIDUE PO4 X 1336
3
AC3
SOFTWARE
HOH X:206 , LYS X:1156 , GLN X:1233 , ASN X:1236 , ASN X:1251 , TRP X:1254
BINDING SITE FOR RESIDUE PO4 X 1337
4
AC4
SOFTWARE
HOH X:284 , HOH X:331 , ASN X:1102 , ALA X:1103 , ALA X:1104 , GLU X:1319
BINDING SITE FOR RESIDUE PO4 X 1338
5
AC5
SOFTWARE
HOH X:211 , ALA X:1002 , LEU X:1003 , GLU X:1028 , ARG X:1293 , ARG X:1297
BINDING SITE FOR RESIDUE PO4 X 1339
6
AC6
SOFTWARE
HOH X:104 , HOH X:228 , ASP X:1146 , ARG X:1148 , ARG X:1202 , GLU X:1205
BINDING SITE FOR RESIDUE PO4 X 1340
7
AC7
SOFTWARE
HOH X:263 , SER X:1235 , THR X:1237 , GLN X:1248
BINDING SITE FOR RESIDUE PO4 X 1341
8
AC8
SOFTWARE
HOH X:49 , TYR X:1180 , GLN X:1183 , PHE X:1184 , CYS X:1253 , TRP X:1254
BINDING SITE FOR RESIDUE BME X 2001
9
AC9
SOFTWARE
HOH X:34 , HOH X:342 , PHE X:1154 , LYS X:1156
BINDING SITE FOR RESIDUE GOL X 3001
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SAPs(SNPs)/Variants
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_GFO_IDH_MocA_2o4uX01 (X:1003-1124)
2a: PFAM_GFO_IDH_MocA_C_2o4uX02 (X:1136-1243)
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Clans
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(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
GFO_IDH_MocA
(25)
Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
(3)
1a
GFO_IDH_MocA-2o4uX01
X:1003-1124
Clan
:
ox_reductase_C
(19)
Family
:
GFO_IDH_MocA_C
(19)
Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
(3)
2a
GFO_IDH_MocA_C-2o4uX02
X:1136-1243
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Asym.Unit (66 KB)
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