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2O4A
Asym. Unit
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Biol.Unit 1 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL CUT DOMAIN OF SATB1 BOUND TO MATRIX ATTACHMENT REGION DNA
Authors
:
K. Yamasaki, T. Akiba, K. Harata
Date
:
04 Dec 06 (Deposition) - 14 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Protein-Dna Complex, Transcription, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
K. Yamasaki, T. Akiba, T. Yamasaki, K. Harata
Structural Basis For Recognition Of The Matrix Attachment Region Of Dna By Transcription Factor Satb1.
Nucleic Acids Res. V. 35 5073 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(2, 2)
Info
All Exons
Exon 1.14b (A:370-402)
Exon 1.15 (A:403-453)
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All Exon Boundaries
1: Boundary 1.13c/1.14b
2: Boundary 1.14b/1.15
3: Boundary 1.15/1.16b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.6b
ENST00000338745
6b
ENSE00001376874
chr3:
18466829-18465119
1711
SATB1_HUMAN
-
0
0
-
-
1.7c
ENST00000338745
7c
ENSE00002182018
chr3:
18462483-18462249
235
SATB1_HUMAN
1-71
71
0
-
-
1.10c
ENST00000338745
10c
ENSE00001337013
chr3:
18458570-18458394
177
SATB1_HUMAN
71-130
60
0
-
-
1.11b
ENST00000338745
11b
ENSE00001337011
chr3:
18457625-18457499
127
SATB1_HUMAN
130-172
43
0
-
-
1.12c
ENST00000338745
12c
ENSE00001337009
chr3:
18456726-18456603
124
SATB1_HUMAN
172-213
42
0
-
-
1.13c
ENST00000338745
13c
ENSE00001337007
chr3:
18438782-18438671
112
SATB1_HUMAN
214-251
38
0
-
-
1.14b
ENST00000338745
14b
ENSE00001337005
chr3:
18436408-18435954
455
SATB1_HUMAN
251-402
152
1
A:370-402
33
1.15
ENST00000338745
15
ENSE00001337004
chr3:
18428103-18427891
213
SATB1_HUMAN
403-473
71
1
A:403-453
51
1.16b
ENST00000338745
16b
ENSE00001337002
chr3:
18419817-18419662
156
SATB1_HUMAN
474-525
52
0
-
-
1.17a
ENST00000338745
17a
ENSE00001298223
chr3:
18393687-18393484
204
SATB1_HUMAN
526-593
68
0
-
-
1.19d
ENST00000338745
19d
ENSE00001918488
chr3:
18391174-18386864
4311
SATB1_HUMAN
594-763
170
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2o4aa_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
lambda repressor-like DNA-binding domains
(180)
Superfamily
:
lambda repressor-like DNA-binding domains
(180)
Family
:
CUT domain
(10)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2o4aa_
A:
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CATH Domains
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_CUT_2o4aA01 (A:370-448)
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Clan
:
no clan defined [family: CUT]
(6)
Family
:
CUT
(6)
Homo sapiens (Human)
(5)
1a
CUT-2o4aA01
A:370-448
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