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2O39
Biol. Unit 2
Info
Asym.Unit (114 KB)
Biol.Unit 1 (161 KB)
Biol.Unit 2 (160 KB)
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(1)
Title
:
HUMAN ADENOVIRUS TYPE 11 KNOB IN COMPLEX WITH DOMAINS SCR1 AND SCR2 OF CD46 (MEMBRANE COFACTOR PROTEIN, MCP)
Authors
:
D. B. Persson, D. M. Reiter, N. Arnberg, T. Stehle
Date
:
01 Dec 06 (Deposition) - 09 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (3x)
Biol. Unit 2: B,D (3x)
Keywords
:
Membrane Cofactor Protein, Mcp, Cd46, Adenovirus, Fiber Knob, Ad11, Virus Receptor Complex, Scr, Short Consensus Repeat, Ccp, Complement Control Protein, Viral Protein-Immune System Complex
(Keyword Search:
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Reference
:
B. D. Persson, D. M. Reiter, M. Marttila, Y. F. Mei, J. M. Casasnovas, N. Arnberg, T. Stehle
Adenovirus Type 11 Binding Alters The Conformation Of Its Receptor Cd46.
Nat. Struct. Mol. Biol. V. 14 164 2007
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(5, 5)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ASN D:80 , TYR D:87 , GLN D:88 , HIS D:90 , NAG D:2080
BINDING SITE FOR RESIDUE NAG D 1080
2
AC5
SOFTWARE
NAG D:1080 , BMA D:3080
BINDING SITE FOR RESIDUE NAG D 2080
3
AC6
SOFTWARE
NAG D:2080
BINDING SITE FOR RESIDUE BMA D 3080
4
AC8
SOFTWARE
ASP D:57 , ASP D:58
BINDING SITE FOR RESIDUE CA D 3081
5
AC9
SOFTWARE
ASP C:70 , ALA C:76 , ASP D:70 , ALA D:76
BINDING SITE FOR RESIDUE CA D 3082
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SAPs(SNPs)/Variants
(2, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_063656 (C1Y, chain D, )
2: VAR_026568 (R25Q, chain D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063656
C
35
Y
MCP_HUMAN
Disease (AHUS2)
---
D
C
1
Y
2
UniProt
VAR_026568
R
59
Q
MCP_HUMAN
Polymorphism
---
D
R
25
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: SUSHI (D:126-126|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
MCP_HUMAN
33-96
97-159
160-225
226-285
6
-
-
D:63-125
-
D:126-126
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2o39a1 (A:129-325)
1b: SCOP_d2o39b_ (B:)
2a: SCOP_d2o39c1 (C:1-62)
2b: SCOP_d2o39c2 (C:63-126)
2c: SCOP_d2o39d1 (D:1-62)
2d: SCOP_d2o39d2 (D:63-126)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Virus attachment protein globular domain
(47)
Superfamily
:
Virus attachment protein globular domain
(47)
Family
:
Adenovirus fiber protein knob domain
(27)
Protein domain
:
Adenovirus fiber protein knob domain
(14)
Human adenovirus type 11P [TaxId: 343462]
(1)
1a
d2o39a1
A:129-325
1b
d2o39b_
B:
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
CD46 (membrane cofactor protein, MCP)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d2o39c1
C:1-62
2b
d2o39c2
C:63-126
2c
d2o39d1
D:1-62
2d
d2o39d2
D:63-126
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2o39C01 (C:1-62)
1b: CATH_2o39D01 (D:1-62)
1c: CATH_2o39C02 (C:63-126)
1d: CATH_2o39D02 (D:63-126)
2a: CATH_2o39A00 (A:129-325)
2b: CATH_2o39B00 (B:129-325)
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Organisms
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Human adenovirus 11p. Organism_taxid: 343462. Strain: slobiski.
(1)
1a
2o39C01
C:1-62
1b
2o39D01
D:1-62
1c
2o39C02
C:63-126
1d
2o39D02
D:63-126
Architecture
:
Sandwich
(5577)
Topology
:
Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
(25)
Homologous Superfamily
:
Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
(24)
Human adenovirus 11p. Organism_taxid: 343462. Strain: slobiski.
(1)
2a
2o39A00
A:129-325
2b
2o39B00
B:129-325
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Sushi_2o39D01 (D:65-123)
1b: PFAM_Sushi_2o39D02 (D:65-123)
1c: PFAM_Sushi_2o39D03 (D:65-123)
1d: PFAM_Sushi_2o39D04 (D:65-123)
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Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
1a
Sushi-2o39D01
D:65-123
1b
Sushi-2o39D02
D:65-123
1c
Sushi-2o39D03
D:65-123
1d
Sushi-2o39D04
D:65-123
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Asym.Unit (114 KB)
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