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Asym. Unit
Info
Asym.Unit (204 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (100 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PROTEIN MEMBER OF THE UPF0052 FAMILY (BH3568) FROM BACILLUS HALODURANS AT 2.60 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
30 Nov 06 (Deposition) - 19 Dec 06 (Release) - 23 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Nad-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Np_244435. 1) Fro Bacillus Halodurans At 2. 60 A Resolution
To Be Published
[
close entry info
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Hetero Components
(3, 34)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
22
Mod. Amino Acid
SELENOMETHIONINE
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER B:41 , SER B:42 , ARG B:58 , ARG B:78 , ASN B:92
BINDING SITE FOR RESIDUE SO4 B 323
02
AC2
SOFTWARE
GLY A:40 , SER A:41 , SER A:42 , ARG A:58 , ARG A:78 , ASN A:92
BINDING SITE FOR RESIDUE SO4 A 323
03
AC3
SOFTWARE
SER D:41 , SER D:42 , ARG D:58 , ARG D:78 , ASN D:92 , HOH D:438 , HOH D:469
BINDING SITE FOR RESIDUE SO4 D 323
04
AC4
SOFTWARE
SER C:41 , SER C:42 , ARG C:58 , ARG C:78 , ASN C:92 , HOH C:463
BINDING SITE FOR RESIDUE SO4 C 323
05
AC5
SOFTWARE
GLY A:11 , GLY A:12 , THR A:13 , GLY A:14 , GLY A:186 , SER A:187 , SER A:191 , NAD A:400 , HOH A:448
BINDING SITE FOR RESIDUE SO4 A 324
06
AC6
SOFTWARE
GLY C:11 , GLY C:12 , THR C:13 , GLY C:14 , GLY C:186 , SER C:187 , SER C:191 , NAD C:400 , HOH C:406
BINDING SITE FOR RESIDUE SO4 C 324
07
AC7
SOFTWARE
GLY D:11 , GLY D:12 , THR D:13 , GLY D:186 , SER D:187 , SER D:191 , NAD D:400 , HOH D:403 , HOH D:467
BINDING SITE FOR RESIDUE SO4 D 324
08
AC8
SOFTWARE
GLY B:11 , GLY B:12 , THR B:13 , GLY B:186 , SER B:187 , SER B:191 , NAD B:400 , HOH B:406 , HOH B:465
BINDING SITE FOR RESIDUE SO4 B 324
09
AC9
SOFTWARE
THR A:13 , GLY A:14 , GLY A:186 , SER A:187 , ASN A:217 , VAL A:218 , MSE A:219 , GLN A:221 , LYS A:263 , TYR A:264 , GLU A:267 , VAL A:298 , ARG A:300 , HIS A:301 , SO4 A:324 , HOH A:418
BINDING SITE FOR RESIDUE NAD A 400
10
BC1
SOFTWARE
THR B:13 , GLY B:14 , GLY B:186 , SER B:187 , ASN B:217 , VAL B:218 , MSE B:219 , GLN B:221 , LYS B:263 , TYR B:264 , GLU B:267 , VAL B:298 , ARG B:300 , HIS B:301 , SO4 B:324 , HOH B:424 , HOH B:456
BINDING SITE FOR RESIDUE NAD B 400
11
BC2
SOFTWARE
THR C:13 , GLY C:14 , GLY C:186 , SER C:187 , ASN C:217 , VAL C:218 , MSE C:219 , GLN C:221 , LYS C:263 , TYR C:264 , GLU C:267 , VAL C:298 , ARG C:300 , HIS C:301 , SO4 C:324 , HOH C:417 , HOH C:438
BINDING SITE FOR RESIDUE NAD C 400
12
BC3
SOFTWARE
THR D:13 , GLY D:14 , GLY D:186 , SER D:187 , ASN D:217 , VAL D:218 , MSE D:219 , GLN D:221 , LYS D:263 , TYR D:264 , GLU D:267 , VAL D:298 , ARG D:300 , HIS D:301 , SO4 D:324 , HOH D:431 , HOH D:474
BINDING SITE FOR RESIDUE NAD D 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2o2za_ (A:)
1b: SCOP_d2o2zb_ (B:)
1c: SCOP_d2o2zc_ (C:)
1d: SCOP_d2o2zd_ (D:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
CofD-like
(6)
Superfamily
:
CofD-like
(6)
Family
:
CofD-like
(5)
Protein domain
:
automated matches
(1)
Bacillus halodurans [TaxId: 86665]
(1)
1a
d2o2za_
A:
1b
d2o2zb_
B:
1c
d2o2zc_
C:
1d
d2o2zd_
D:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (204 KB)
Header - Asym.Unit
Biol.Unit 1 (99 KB)
Header - Biol.Unit 1
Biol.Unit 2 (100 KB)
Header - Biol.Unit 2
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