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2O2P
Biol. Unit 2
Info
Asym.Unit (362 KB)
Biol.Unit 1 (355 KB)
Biol.Unit 2 (704 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF RAT 10'FORMYLTETRAHYDROFOLATE DEHYDROGENASE
Authors
:
Y. Tsybovsky, H. Donato, N. I. Krupenko, C. Davies, S. A. Krupenko
Date
:
30 Nov 06 (Deposition) - 06 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B,C,D (2x)
Keywords
:
Aldehyde Dehydrogenase, Fdh, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tsybovsky, H. Donato, N. I. Krupenko, C. Davies, S. A. Krupenko
Crystal Structures Of The Carboxyl Terminal Domain Of Rat 10-Formyltetrahydrofolate Dehydrogenase: Implications For The Catalytic Mechanism Of Aldehyde Dehydrogenases.
Biochemistry V. 46 2917 2007
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Hetero Components
(2, 64)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
8
Ligand/Ion
GLYCEROL
2
SO4
56
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:852 , ARG C:554
BINDING SITE FOR RESIDUE SO4 A 3001
02
AC2
SOFTWARE
ARG A:554 , LYS C:852 , HOH C:3110
BINDING SITE FOR RESIDUE SO4 A 3002
03
AC3
SOFTWARE
ARG B:554 , HOH B:3388 , LYS D:852 , HOH D:3196
BINDING SITE FOR RESIDUE SO4 B 3003
04
AC4
SOFTWARE
ASP B:851 , LYS B:852 , HOH B:3141 , ARG D:554
BINDING SITE FOR RESIDUE SO4 B 3004
05
AC5
SOFTWARE
ARG B:636 , PRO B:641
BINDING SITE FOR RESIDUE SO4 B 3005
06
AC6
SOFTWARE
ARG A:636 , PRO A:641
BINDING SITE FOR RESIDUE SO4 A 3006
07
AC7
SOFTWARE
ARG C:636 , PRO C:641
BINDING SITE FOR RESIDUE SO4 C 3007
08
AC8
SOFTWARE
ARG D:636 , PRO D:641
BINDING SITE FOR RESIDUE SO4 D 3008
09
AC9
SOFTWARE
ARG B:764
BINDING SITE FOR RESIDUE SO4 B 3009
10
BC1
SOFTWARE
ARG C:764 , TYR C:799
BINDING SITE FOR RESIDUE SO4 C 3010
11
BC2
SOFTWARE
ARG A:764
BINDING SITE FOR RESIDUE SO4 A 3011
12
BC3
SOFTWARE
ARG D:764
BINDING SITE FOR RESIDUE SO4 D 3012
13
BC4
SOFTWARE
TYR A:848 , ARG C:551 , ARG C:554
BINDING SITE FOR RESIDUE SO4 C 3013
14
BC5
SOFTWARE
ARG A:551 , ARG A:554 , TYR C:848
BINDING SITE FOR RESIDUE SO4 A 3014
15
BC6
SOFTWARE
ARG B:551 , ARG B:554 , TYR D:848
BINDING SITE FOR RESIDUE SO4 B 3015
16
BC7
SOFTWARE
TYR B:848 , ARG D:551 , ARG D:554
BINDING SITE FOR RESIDUE SO4 D 3016
17
BC8
SOFTWARE
ASN A:548 , HOH A:3158 , HOH A:3285 , HOH A:3438 , GLN B:528
BINDING SITE FOR RESIDUE SO4 A 3017
18
BC9
SOFTWARE
GLN A:528 , ASN B:548 , HOH B:3186 , HOH B:3306 , HOH B:3331
BINDING SITE FOR RESIDUE SO4 B 3018
19
CC1
SOFTWARE
ASN C:548 , HOH C:3282 , HOH C:3446 , HOH C:3512 , GLN D:528
BINDING SITE FOR RESIDUE SO4 C 3019
20
CC2
SOFTWARE
ASN A:738 , GLU A:741 , ARG A:781 , HOH A:3191 , HOH A:3412 , HOH C:3285
BINDING SITE FOR RESIDUE SO4 A 3020
21
CC3
SOFTWARE
THR B:445 , ASN B:738 , GLU B:741 , ARG B:781 , HOH B:3153
BINDING SITE FOR RESIDUE SO4 B 3021
22
CC4
SOFTWARE
ASN C:738 , ARG C:781 , HOH C:3071 , HOH C:3513
BINDING SITE FOR RESIDUE SO4 C 3022
23
CC5
SOFTWARE
ASN D:738 , GLU D:741 , ARG D:781
BINDING SITE FOR RESIDUE SO4 D 3023
24
CC6
SOFTWARE
GLY A:881 , LYS A:882 , HOH A:3029 , LYS B:669 , LEU B:893 , ARG B:894 , ILE B:895 , HOH B:3235
BINDING SITE FOR RESIDUE SO4 B 3024
25
CC7
SOFTWARE
LYS A:669 , LEU A:893 , ARG A:894 , ILE A:895 , HOH A:3034 , HOH A:3326 , HOH A:3478 , GLY B:881 , LYS B:882
BINDING SITE FOR RESIDUE SO4 A 3025
26
CC8
SOFTWARE
GLY C:881 , LYS C:882 , LYS D:669 , LEU D:893 , ARG D:894 , ILE D:895 , HOH D:3029 , HOH D:3120 , HOH D:3199 , HOH D:3449
BINDING SITE FOR RESIDUE SO4 D 3026
27
CC9
SOFTWARE
LYS C:669 , LEU C:893 , ARG C:894 , ILE C:895 , HOH C:3035 , HOH C:3105 , HOH C:3169 , HOH C:3509 , HOH C:3514 , GLY D:881 , LYS D:882
BINDING SITE FOR RESIDUE SO4 C 3027
28
DC1
SOFTWARE
LEU A:416 , THR A:417 , HOH A:3428 , LYS C:415 , ARG C:742
BINDING SITE FOR RESIDUE SO4 C 3028
29
DC2
SOFTWARE
TYR A:575 , ASN A:706 , THR A:866
BINDING SITE FOR RESIDUE GOL A 2001
30
DC3
SOFTWARE
TYR B:575 , ASN B:706 , THR B:866
BINDING SITE FOR RESIDUE GOL B 2002
31
DC4
SOFTWARE
TYR C:575 , ASN C:706 , THR C:866
BINDING SITE FOR RESIDUE GOL C 2003
32
DC5
SOFTWARE
TYR D:575 , ASN D:706 , ASN D:864 , THR D:866
BINDING SITE FOR RESIDUE GOL D 2004
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:672-679,B:672-679,C:672-679,D:67...)
2: ALDEHYDE_DEHYDR_CYS (A:700-711,B:700-711,C:700-711,D:70...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
AL1L1_RAT
672-679
8
A:672-679
B:672-679
C:672-679
D:672-679
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
AL1L1_RAT
700-711
8
A:700-711
B:700-711
C:700-711
D:700-711
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2o2pa_ (A:)
1b: SCOP_d2o2pb_ (B:)
1c: SCOP_d2o2pc_ (C:)
1d: SCOP_d2o2pd_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(12)
1a
d2o2pa_
A:
1b
d2o2pb_
B:
1c
d2o2pc_
C:
1d
d2o2pd_
D:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2o2pA01 (A:410-675,A:868-902)
1b: CATH_2o2pB01 (B:410-675,B:868-902)
1c: CATH_2o2pC01 (C:410-675,C:868-902)
1d: CATH_2o2pD01 (D:410-675,D:868-902)
2a: CATH_2o2pA02 (A:676-867)
2b: CATH_2o2pB02 (B:676-867)
2c: CATH_2o2pC02 (C:676-867)
2d: CATH_2o2pD02 (D:676-867)
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Topologies
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Norway rat (Rattus norvegicus)
(5)
1a
2o2pA01
A:410-675,A:868-902
1b
2o2pB01
B:410-675,B:868-902
1c
2o2pC01
C:410-675,C:868-902
1d
2o2pD01
D:410-675,D:868-902
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Norway rat (Rattus norvegicus)
(5)
2a
2o2pA02
A:676-867
2b
2o2pB02
B:676-867
2c
2o2pC02
C:676-867
2d
2o2pD02
D:676-867
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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