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2O2L
Asym. Unit
Info
Asym.Unit (189 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (93 KB)
Biol.Unit 3 (86 KB)
Biol.Unit 4 (87 KB)
Biol.Unit 5 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN HEAT-LABILE ENTEROTOXIN IN COMPLEX WITH A BLOOD GROUP A ANTIGEN ANALOG
Authors
:
A. Holmner, G. Askarieh, M. Okvist, U. Krengel
Date
:
30 Nov 06 (Deposition) - 14 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.53
Chains
:
Asym. Unit : D,E,F,G,H,I,J,K,L,M,N
#
,O
#
,P
#
,Q
#
,R
#
,S
#
,T
#
,U
#
,V
#
,W
#
Biol. Unit 1: D,E,F,G,H,N
#
,O
#
,P
#
,Q
#
,R
#
(1x)
Biol. Unit 2: I,J,K,L,M,S
#
,T
#
,U
#
,V
#
,W
#
(1x)
Biol. Unit 3: I,J,K,L,M (1x)
Biol. Unit 4: D,E,F,G,H (1x)
Biol. Unit 5: I,J,K,L,M (1x)
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Enterotoxigenic E. Coli, Heat-Labile Enterotoxin, Blood Group Antigen, Toxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Holmner, G. Askarieh, M. Okvist, U. Krengel
Blood Group Antigen Recognition By Escherichia Coli Heat-Labile Enterotoxin
J. Mol. Biol. V. 371 754 2007
[
close entry info
]
Hetero Components
(4, 50)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
1b: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gb)
1c: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gc)
1d: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gd)
1e: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ge)
1f: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gf)
1g: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gg)
1h: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gh)
1i: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gi)
1j: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gj)
2a: BETA-D-GLUCOSE (BGCa)
2b: BETA-D-GLUCOSE (BGCb)
2c: BETA-D-GLUCOSE (BGCc)
2d: BETA-D-GLUCOSE (BGCd)
2e: BETA-D-GLUCOSE (BGCe)
2f: BETA-D-GLUCOSE (BGCf)
2g: BETA-D-GLUCOSE (BGCg)
2h: BETA-D-GLUCOSE (BGCh)
2i: BETA-D-GLUCOSE (BGCi)
2j: BETA-D-GLUCOSE (BGCj)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
3d: ALPHA-L-FUCOSE (FUCd)
3e: ALPHA-L-FUCOSE (FUCe)
3f: ALPHA-L-FUCOSE (FUCf)
3g: ALPHA-L-FUCOSE (FUCg)
3h: ALPHA-L-FUCOSE (FUCh)
3i: ALPHA-L-FUCOSE (FUCi)
3j: ALPHA-L-FUCOSE (FUCj)
3k: ALPHA-L-FUCOSE (FUCk)
3l: ALPHA-L-FUCOSE (FUCl)
3m: ALPHA-L-FUCOSE (FUCm)
3n: ALPHA-L-FUCOSE (FUCn)
3o: ALPHA-L-FUCOSE (FUCo)
3p: ALPHA-L-FUCOSE (FUCp)
3q: ALPHA-L-FUCOSE (FUCq)
3r: ALPHA-L-FUCOSE (FUCr)
3s: ALPHA-L-FUCOSE (FUCs)
3t: ALPHA-L-FUCOSE (FUCt)
4a: BETA-D-GALACTOSE (GALa)
4b: BETA-D-GALACTOSE (GALb)
4c: BETA-D-GALACTOSE (GALc)
4d: BETA-D-GALACTOSE (GALd)
4e: BETA-D-GALACTOSE (GALe)
4f: BETA-D-GALACTOSE (GALf)
4g: BETA-D-GALACTOSE (GALg)
4h: BETA-D-GALACTOSE (GALh)
4i: BETA-D-GALACTOSE (GALi)
4j: BETA-D-GALACTOSE (GALj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A2G
10
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
BGC
10
Ligand/Ion
BETA-D-GLUCOSE
3
FUC
20
Ligand/Ion
ALPHA-L-FUCOSE
4
GAL
10
Ligand/Ion
BETA-D-GALACTOSE
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR D:18 , HOH N:131 , HOH N:138 , GAL N:202 , FUC N:203 , FUC N:205
BINDING SITE FOR RESIDUE BGC N 204
02
AC2
SOFTWARE
GLY D:45 , GLN K:16 , ILE K:17 , HOH N:92 , A2G N:201 , FUC N:203 , BGC N:204 , FUC N:205
BINDING SITE FOR RESIDUE GAL N 202
03
AC3
SOFTWARE
THR D:41 , GLY D:45 , THR D:47 , GLN H:3 , THR K:6 , ILE K:17 , THR K:19 , LYS K:84 , GAL N:202 , FUC N:203
BINDING SITE FOR RESIDUE A2G N 201
04
AC4
SOFTWARE
ALA D:46 , THR D:47 , PHE D:48 , PRO D:93 , ASN D:94 , HOH D:124 , GLN H:3 , HOH N:138 , A2G N:201 , GAL N:202 , BGC N:204
BINDING SITE FOR RESIDUE FUC N 203
05
AC5
SOFTWARE
ALA D:46 , GAL N:202 , BGC N:204 , BGC U:204
BINDING SITE FOR RESIDUE FUC N 205
06
AC6
SOFTWARE
TYR E:18 , HOH O:37 , GAL O:202 , FUC O:203 , FUC O:205
BINDING SITE FOR RESIDUE BGC O 204
07
AC7
SOFTWARE
GLY E:45 , A2G O:201 , FUC O:203 , BGC O:204 , FUC O:205 , GAL Q:202
BINDING SITE FOR RESIDUE GAL O 202
08
AC8
SOFTWARE
GLN D:3 , GLY E:45 , THR E:47 , HOH O:171 , GAL O:202 , FUC O:203 , GAL Q:202 , FUC Q:205
BINDING SITE FOR RESIDUE A2G O 201
09
AC9
SOFTWARE
GLN D:3 , TYR E:18 , ALA E:46 , THR E:47 , THR E:92 , PRO E:93 , ASN E:94 , HOH O:37 , A2G O:201 , GAL O:202 , BGC O:204
BINDING SITE FOR RESIDUE FUC O 203
10
BC1
SOFTWARE
SER E:44 , GLY E:45 , ALA E:46 , GAL O:202 , BGC O:204
BINDING SITE FOR RESIDUE FUC O 205
11
BC2
SOFTWARE
TYR F:18 , GLN K:16 , ASN K:89 , HOH K:123 , HOH K:126 , HOH K:128 , GAL P:202 , FUC P:203 , FUC P:205 , BGC U:204
BINDING SITE FOR RESIDUE BGC P 204
12
BC3
SOFTWARE
GLY F:45 , ASN K:14 , A2G P:201 , FUC P:203 , BGC P:204 , FUC P:205
BINDING SITE FOR RESIDUE GAL P 202
13
BC4
SOFTWARE
GLN E:3 , HOH E:118 , GLY F:45 , THR F:47 , LYS H:34 , ASN K:14 , ASN K:90 , HOH P:39 , GAL P:202
BINDING SITE FOR RESIDUE A2G P 201
14
BC5
SOFTWARE
GLN E:3 , TYR F:18 , ALA F:46 , THR F:47 , PHE F:48 , PRO F:93 , ASN F:94 , HOH F:130 , HOH P:39 , GAL P:202 , BGC P:204
BINDING SITE FOR RESIDUE FUC P 203
15
BC6
SOFTWARE
SER F:44 , ALA F:46 , HOH K:128 , GAL P:202 , BGC P:204
BINDING SITE FOR RESIDUE FUC P 205
16
BC7
SOFTWARE
TYR G:18 , GAL Q:202 , FUC Q:203 , FUC Q:205
BINDING SITE FOR RESIDUE BGC Q 204
17
BC8
SOFTWARE
GLY G:45 , A2G O:201 , GAL O:202 , A2G Q:201 , FUC Q:203 , BGC Q:204 , FUC Q:205
BINDING SITE FOR RESIDUE GAL Q 202
18
BC9
SOFTWARE
GLN F:3 , GLY G:45 , THR G:47 , GAL Q:202 , FUC Q:203
BINDING SITE FOR RESIDUE A2G Q 201
19
CC1
SOFTWARE
GLN F:3 , THR G:47 , PHE G:48 , PRO G:93 , ASN G:94 , HOH Q:170 , A2G Q:201 , GAL Q:202 , BGC Q:204
BINDING SITE FOR RESIDUE FUC Q 203
20
CC2
SOFTWARE
TYR G:18 , SER G:44 , ALA G:46 , A2G O:201 , GAL Q:202 , BGC Q:204
BINDING SITE FOR RESIDUE FUC Q 205
21
CC3
SOFTWARE
TYR H:18 , GAL R:202 , FUC R:203 , FUC R:205
BINDING SITE FOR RESIDUE BGC R 204
22
CC4
SOFTWARE
GLY H:45 , LYS I:43 , A2G R:201 , FUC R:203 , BGC R:204 , FUC R:205
BINDING SITE FOR RESIDUE GAL R 202
23
CC5
SOFTWARE
GLN G:3 , GLY H:45 , THR H:47 , LYS I:43 , SER I:44 , GAL R:202 , FUC R:203 , HOH R:206 , GAL S:202 , FUC S:205
BINDING SITE FOR RESIDUE A2G R 201
24
CC6
SOFTWARE
GLN G:3 , ALA H:46 , THR H:47 , PHE H:48 , THR H:92 , PRO H:93 , ASN H:94 , A2G R:201 , GAL R:202 , BGC R:204
BINDING SITE FOR RESIDUE FUC R 203
25
CC7
SOFTWARE
SER H:44 , ALA H:46 , GAL R:202 , BGC R:204 , HOH R:207
BINDING SITE FOR RESIDUE FUC R 205
26
CC8
SOFTWARE
TYR I:18 , GAL S:202 , FUC S:203 , FUC S:205
BINDING SITE FOR RESIDUE BGC S 204
27
CC9
SOFTWARE
GLY I:45 , A2G R:201 , A2G S:201 , FUC S:203 , BGC S:204 , FUC S:205
BINDING SITE FOR RESIDUE GAL S 202
28
DC1
SOFTWARE
GLY I:45 , THR I:47 , GLN M:3 , GAL S:202 , FUC S:203
BINDING SITE FOR RESIDUE A2G S 201
29
DC2
SOFTWARE
TYR I:18 , ALA I:46 , THR I:47 , PHE I:48 , PRO I:93 , ASN I:94 , GLN M:3 , HOH S:180 , A2G S:201 , GAL S:202 , BGC S:204
BINDING SITE FOR RESIDUE FUC S 203
30
DC3
SOFTWARE
SER G:4 , GLU G:7 , TYR I:18 , A2G R:201 , GAL S:202 , BGC S:204
BINDING SITE FOR RESIDUE FUC S 205
31
DC4
SOFTWARE
ASN E:90 , TYR J:18 , HOH T:105 , GAL T:202 , FUC T:203 , FUC T:205
BINDING SITE FOR RESIDUE BGC T 204
32
DC5
SOFTWARE
GLY J:45 , A2G T:201 , FUC T:203 , BGC T:204 , FUC T:205
BINDING SITE FOR RESIDUE GAL T 202
33
DC6
SOFTWARE
GLN I:3 , GLY J:45 , THR J:47 , HOH T:124 , GAL T:202 , FUC T:203
BINDING SITE FOR RESIDUE A2G T 201
34
DC7
SOFTWARE
GLN I:3 , TYR J:18 , THR J:47 , PRO J:93 , ASN J:94 , A2G T:201 , GAL T:202 , BGC T:204
BINDING SITE FOR RESIDUE FUC T 203
35
DC8
SOFTWARE
SER J:44 , ALA J:46 , GAL T:202 , BGC T:204
BINDING SITE FOR RESIDUE FUC T 205
36
DC9
SOFTWARE
GLN F:16 , ASN F:89 , HOH F:120 , TYR K:18 , FUC N:205 , BGC P:204 , GAL U:202 , FUC U:203 , FUC U:205
BINDING SITE FOR RESIDUE BGC U 204
37
EC1
SOFTWARE
ASN F:14 , GLY K:45 , A2G U:201 , FUC U:203 , BGC U:204 , FUC U:205
BINDING SITE FOR RESIDUE GAL U 202
38
EC2
SOFTWARE
ASN F:14 , ASN F:90 , GLN J:3 , GLY K:45 , THR K:47 , HOH U:150 , GAL U:202 , FUC U:203
BINDING SITE FOR RESIDUE A2G U 201
39
EC3
SOFTWARE
GLN J:3 , ALA K:46 , THR K:47 , PHE K:48 , PRO K:93 , ASN K:94 , A2G U:201 , GAL U:202 , BGC U:204
BINDING SITE FOR RESIDUE FUC U 203
40
EC4
SOFTWARE
SER K:44 , ALA K:46 , HIS L:13 , GAL U:202 , BGC U:204
BINDING SITE FOR RESIDUE FUC U 205
41
EC5
SOFTWARE
LYS E:43 , TYR L:18 , HOH V:187 , GAL V:202 , FUC V:203 , FUC V:205 , HOH V:280
BINDING SITE FOR RESIDUE BGC V 204
42
EC6
SOFTWARE
LYS E:43 , SER H:10 , TYR H:12 , HIS H:13 , HOH H:123 , GLY L:45 , A2G V:201 , FUC V:203 , BGC V:204 , FUC V:205
BINDING SITE FOR RESIDUE GAL V 202
43
EC7
SOFTWARE
SER H:10 , GLN K:3 , HOH K:134 , THR L:41 , GLY L:45 , THR L:47 , HOH L:130 , HOH V:95 , HOH V:195 , GAL V:202 , FUC V:203
BINDING SITE FOR RESIDUE A2G V 201
44
EC8
SOFTWARE
GLN K:3 , TYR L:18 , ALA L:46 , THR L:47 , PHE L:48 , PRO L:93 , ASN L:94 , HOH V:195 , A2G V:201 , GAL V:202 , BGC V:204
BINDING SITE FOR RESIDUE FUC V 203
45
EC9
SOFTWARE
LYS D:103 , LYS E:43 , ASN H:14 , HOH H:115 , SER L:44 , ALA L:46 , HOH V:158 , HOH V:162 , GAL V:202 , BGC V:204 , HOH V:280
BINDING SITE FOR RESIDUE FUC V 205
46
FC1
SOFTWARE
GAL W:202 , FUC W:203 , FUC W:205
BINDING SITE FOR RESIDUE BGC W 204
47
FC2
SOFTWARE
GLY M:45 , A2G W:201 , FUC W:203 , BGC W:204 , FUC W:205
BINDING SITE FOR RESIDUE GAL W 202
48
FC3
SOFTWARE
GLN L:3 , GLY M:45 , THR M:47 , HOH W:185 , GAL W:202 , FUC W:203
BINDING SITE FOR RESIDUE A2G W 201
49
FC4
SOFTWARE
GLN L:3 , THR M:47 , PHE M:48 , THR M:92 , PRO M:93 , ASN M:94 , A2G W:201 , GAL W:202 , BGC W:204
BINDING SITE FOR RESIDUE FUC W 203
50
FC5
SOFTWARE
GAL W:202 , BGC W:204
BINDING SITE FOR RESIDUE FUC W 205
[
close Site info
]
SAPs(SNPs)/Variants
(2, 20)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_ELBH_ECOLX_001 (H13R, chain D/E/F/G/H/I/J/K/L/M, )
2: VAR_ELBH_ECOLX_002 (T75A, chain D/E/F/G/H/I/J/K/L/M, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ELBH_ECOLX_001
*
H
34
R
ELBH_ECOLX
---
---
D/E/F/G/H/I/J/K/L/M
H
13
R
2
UniProt
VAR_ELBH_ECOLX_002
*
T
96
A
ELBH_ECOLX
---
---
D/E/F/G/H/I/J/K/L/M
T
75
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d2o2ld_ (D:)
1b: SCOP_d2o2le_ (E:)
1c: SCOP_d2o2lf_ (F:)
1d: SCOP_d2o2lg_ (G:)
1e: SCOP_d2o2lh_ (H:)
1f: SCOP_d2o2li_ (I:)
1g: SCOP_d2o2lj_ (J:)
1h: SCOP_d2o2lk_ (K:)
1i: SCOP_d2o2ll_ (L:)
1j: SCOP_d2o2lm_ (M:)
View:
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Bacterial AB5 toxins, B-subunits
(85)
Protein domain
:
automated matches
(9)
Escherichia coli [TaxId: 562]
(6)
1a
d2o2ld_
D:
1b
d2o2le_
E:
1c
d2o2lf_
F:
1d
d2o2lg_
G:
1e
d2o2lh_
H:
1f
d2o2li_
I:
1g
d2o2lj_
J:
1h
d2o2lk_
K:
1i
d2o2ll_
L:
1j
d2o2lm_
M:
[
close SCOP info
]
CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_2o2lD00 (D:1-103)
1b: CATH_2o2lH00 (H:1-103)
1c: CATH_2o2lL00 (L:1-103)
1d: CATH_2o2lG00 (G:1-103)
1e: CATH_2o2lM00 (M:1-103)
1f: CATH_2o2lE00 (E:1-103)
1g: CATH_2o2lF00 (F:1-103)
1h: CATH_2o2lI00 (I:1-103)
1i: CATH_2o2lJ00 (J:1-103)
1j: CATH_2o2lK00 (K:1-103)
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.110, no name defined]
(136)
Escherichia coli. Organism_taxid: 562.
(6)
1a
2o2lD00
D:1-103
1b
2o2lH00
H:1-103
1c
2o2lL00
L:1-103
1d
2o2lG00
G:1-103
1e
2o2lM00
M:1-103
1f
2o2lE00
E:1-103
1g
2o2lF00
F:1-103
1h
2o2lI00
I:1-103
1i
2o2lJ00
J:1-103
1j
2o2lK00
K:1-103
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Asymmetric Unit 1
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Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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