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2O2B
Asym. Unit
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Asym.Unit (47 KB)
Biol.Unit 1 (43 KB)
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Title
:
SPECTROSCOPIC AND STRUCTURAL STUDY OF THE HETEROTROPIC LINKAGE BETWEEN HALIDE AND PROTON ION BINDING TO GFP PROTEINS: E2(GFP)-I COMPLEX
Authors
:
G. Garau
Date
:
29 Nov 06 (Deposition) - 15 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.94
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Luminescence, Green Fluorescent Protein, Variant, Gfp, E2, Bioluminescence, Photoactive Protein, Fluorescent Chloride, Bromide, Iodine, Halogen, Luminescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Arosio, G. Garau, F. Ricci, L. Marchetti, R. Bizzarri, F. Beltram
Spectroscopic And Structural Study Of Proton And Halide Ion Cooperative Binding To Gfp.
Biophys. J. V. 93 232 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPY... (CROa)
2a: IODIDE ION (IODa)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CRO
1
Mod. Amino Acid
{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
2
IOD
9
Ligand/Ion
IODIDE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CRO A:1066 , VAL A:1068 , TYR A:1203
BINDING SITE FOR RESIDUE IOD A 1240
2
AC2
SOFTWARE
TYR A:1145 , LEU A:1207
BINDING SITE FOR RESIDUE IOD A 1241
3
AC3
SOFTWARE
ARG A:1215
BINDING SITE FOR RESIDUE IOD A 1244
4
AC4
SOFTWARE
HIS A:1077 , ILE A:1229 , HOH A:1306
BINDING SITE FOR RESIDUE IOD A 1245
5
AC5
SOFTWARE
PHE A:999
BINDING SITE FOR RESIDUE IOD A 1246
6
AC6
SOFTWARE
HOH A:1279
BINDING SITE FOR RESIDUE IOD A 1247
7
AC7
SOFTWARE
ASP A:1180 , PRO A:1192
BINDING SITE FOR RESIDUE IOD A 1248
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_GFP_AEQVI_001 (F1100Y, chain A, )
2: VAR_GFP_AEQVI_002 (T1108S, chain A, )
3: VAR_GFP_AEQVI_003 (L1141M, chain A, )
4: VAR_GFP_AEQVI_004 (V1219I, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_GFP_AEQVI_001
*
F
100
Y
GFP_AEQVI
---
---
A
F
1100
Y
2
UniProt
VAR_GFP_AEQVI_002
*
T
108
S
GFP_AEQVI
---
---
A
T
1108
S
3
UniProt
VAR_GFP_AEQVI_003
*
L
141
M
GFP_AEQVI
---
---
A
L
1141
M
4
UniProt
VAR_GFP_AEQVI_004
*
V
219
I
GFP_AEQVI
---
---
A
V
1219
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2o2ba_ (A:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Fluorescent proteins
(271)
Protein domain
:
Green fluorescent protein, GFP
(161)
Jellyfish (Aequorea victoria) [TaxId: 6100]
(158)
1a
d2o2ba_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_GFP_2o2bA01 (A:1005-1229)
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Clans
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(
)
(
)
Clan
:
GFP
(101)
Family
:
GFP
(101)
Aequorea victoria (Jellyfish)
(53)
1a
GFP-2o2bA01
A:1005-1229
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Chain A
Asymmetric Unit 1
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Asym.Unit (47 KB)
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