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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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2O26
Asym. Unit
Info
Asym.Unit (321 KB)
Biol.Unit 1 (160 KB)
Biol.Unit 2 (157 KB)
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(1)
Title
:
STRUCTURE OF A CLASS III RTK SIGNALING ASSEMBLY
Authors
:
H. Liu, X. Chen, P. J. Focia, X. He
Date
:
29 Nov 06 (Deposition) - 13 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,E,F,U,W,X,Y
Biol. Unit 1: A,B,X,Y (1x)
Biol. Unit 2: E,F,U,W (1x)
Keywords
:
Stem Cell Factor, Receptor Tyrosine Kinase, Class Iii, Receptor- Ligand Complex, Growth Factor, Cytokine, 4-Helix Bundle, Cytokine- Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Liu, X. Chen, P. J. Focia, X. He
Structural Basis For Stem Cell Factor-Kit Signaling And Activation Of Class Iii Receptor Tyrosine Kinases.
Embo J. V. 26 891 2007
[
close entry info
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: BETA-L-FUCOSE (FULa)
1b: BETA-L-FUCOSE (FULb)
1c: BETA-L-FUCOSE (FULc)
1d: BETA-L-FUCOSE (FULd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUL
4
Ligand/Ion
BETA-L-FUCOSE
2
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
15
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
FUL X:1 , NAG X:3 , MET X:246 , TYR X:294 , ASN X:296 , ASN X:297
BINDING SITE FOR RESIDUE NAG X 2
02
AC2
SOFTWARE
NAG X:2 , NAG X:3 , TYR X:294 , HOH X:562
BINDING SITE FOR RESIDUE FUL X 1
03
AC3
SOFTWARE
FUL X:1 , NAG X:2 , HOH X:372
BINDING SITE FOR RESIDUE NAG X 3
04
AC4
SOFTWARE
NAG X:5 , MET X:292 , TYR X:294 , ASN X:303 , HOH X:394 , HOH X:523
BINDING SITE FOR RESIDUE NAG X 4
05
AC5
SOFTWARE
NAG X:4 , MAN X:6 , HOH X:394 , HOH X:399 , HOH X:463 , HOH X:582
BINDING SITE FOR RESIDUE NAG X 5
06
AC6
SOFTWARE
NAG X:5 , HOH X:468
BINDING SITE FOR RESIDUE MAN X 6
07
AC7
SOFTWARE
FUL Y:1 , NAG Y:3 , ASN Y:296 , ASN Y:297 , HOH Y:384 , HOH Y:418 , HOH Y:566
BINDING SITE FOR RESIDUE NAG Y 2
08
AC8
SOFTWARE
NAG Y:2 , TYR Y:294 , HOH Y:384 , HOH Y:592
BINDING SITE FOR RESIDUE FUL Y 1
09
AC9
SOFTWARE
NAG Y:2 , HOH Y:592
BINDING SITE FOR RESIDUE NAG Y 3
10
BC1
SOFTWARE
NAG Y:5 , MET Y:292 , ASN Y:303 , HOH Y:426 , HOH Y:457
BINDING SITE FOR RESIDUE NAG Y 4
11
BC2
SOFTWARE
NAG Y:4 , MAN Y:6
BINDING SITE FOR RESIDUE NAG Y 5
12
BC3
SOFTWARE
NAG Y:5 , HOH Y:508
BINDING SITE FOR RESIDUE MAN Y 6
13
BC4
SOFTWARE
FUL U:1 , NAG U:3 , TYR U:294 , ASN U:296 , HOH U:486 , HOH U:583
BINDING SITE FOR RESIDUE NAG U 2
14
BC5
SOFTWARE
NAG U:2 , NAG U:3 , TYR U:294
BINDING SITE FOR RESIDUE FUL U 1
15
BC6
SOFTWARE
FUL U:1 , NAG U:2 , HOH U:543 , HOH U:545 , HOH U:552 , HOH U:583
BINDING SITE FOR RESIDUE NAG U 3
16
BC7
SOFTWARE
NAG U:5 , MET U:292 , ASN U:303
BINDING SITE FOR RESIDUE NAG U 4
17
BC8
SOFTWARE
NAG U:4 , MAN U:6 , HOH U:475 , HOH U:501
BINDING SITE FOR RESIDUE NAG U 5
18
BC9
SOFTWARE
NAG U:5
BINDING SITE FOR RESIDUE MAN U 6
19
CC1
SOFTWARE
FUL W:1 , NAG W:3 , MET W:246 , ASN W:296 , ASN W:297 , HOH W:348
BINDING SITE FOR RESIDUE NAG W 2
20
CC2
SOFTWARE
NAG W:2 , NAG W:3 , TYR W:294 , HOH W:491
BINDING SITE FOR RESIDUE FUL W 1
21
CC3
SOFTWARE
FUL W:1 , NAG W:2 , HOH W:485
BINDING SITE FOR RESIDUE NAG W 3
22
CC4
SOFTWARE
NAG W:5 , MET W:292 , ASN W:303 , HOH W:337 , HOH W:422 , HOH W:462
BINDING SITE FOR RESIDUE NDG W 4
23
CC5
SOFTWARE
NDG W:4 , MAN W:6
BINDING SITE FOR RESIDUE NAG W 5
24
CC6
SOFTWARE
NAG W:5 , HOH W:376
BINDING SITE FOR RESIDUE MAN W 6
[
close Site info
]
SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_SCF_MOUSE_001 (N97S, chain A/B/E/F, )
2: VAR_KIT_MOUSE_001 (E207E, chain U/W/X/Y, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_SCF_MOUSE_001
*
N
122
S
SCF_MOUSE
---
---
A/B/E/F
N
97
S
2
UniProt
VAR_KIT_MOUSE_001
*
A
207
E
KIT_MOUSE
---
---
U/W/X/Y
E
207
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2o26a_ (A:)
1b: SCOP_d2o26b_ (B:)
1c: SCOP_d2o26e_ (E:)
1d: SCOP_d2o26f_ (F:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
automated matches
(16)
Mouse (Mus musculus) [TaxId: 10090]
(5)
1a
d2o26a_
A:
1b
d2o26b_
B:
1c
d2o26e_
E:
1d
d2o26f_
F:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2o26B00 (B:3-141)
1b: CATH_2o26E00 (E:3-141)
1c: CATH_2o26F00 (F:3-141)
1d: CATH_2o26A00 (A:3-146)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
House mouse (Mus musculus)
(6)
1a
2o26B00
B:3-141
1b
2o26E00
E:3-141
1c
2o26F00
F:3-141
1d
2o26A00
A:3-146
[
close CATH info
]
Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_SCF_2o26F01 (F:3-141)
1b: PFAM_SCF_2o26F02 (F:3-141)
1c: PFAM_SCF_2o26F03 (F:3-141)
1d: PFAM_SCF_2o26F04 (F:3-141)
2a: PFAM_I_set_2o26Y01 (Y:213-310)
2b: PFAM_I_set_2o26Y02 (Y:213-310)
2c: PFAM_I_set_2o26Y03 (Y:213-310)
2d: PFAM_I_set_2o26Y04 (Y:213-310)
3a: PFAM_Ig_2_2o26Y05 (Y:36-112)
3b: PFAM_Ig_2_2o26Y06 (Y:36-112)
3c: PFAM_Ig_2_2o26Y07 (Y:36-112)
3d: PFAM_Ig_2_2o26Y08 (Y:36-112)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
4H_Cytokine
(48)
Family
:
SCF
(3)
Mus musculus (Mouse)
(2)
1a
SCF-2o26F01
F:3-141
1b
SCF-2o26F02
F:3-141
1c
SCF-2o26F03
F:3-141
1d
SCF-2o26F04
F:3-141
Clan
:
Ig
(577)
Family
:
I-set
(67)
Mus musculus (Mouse)
(4)
2a
I-set-2o26Y01
Y:213-310
2b
I-set-2o26Y02
Y:213-310
2c
I-set-2o26Y03
Y:213-310
2d
I-set-2o26Y04
Y:213-310
Family
:
Ig_2
(52)
Mus musculus (Mouse)
(6)
3a
Ig_2-2o26Y05
Y:36-112
3b
Ig_2-2o26Y06
Y:36-112
3c
Ig_2-2o26Y07
Y:36-112
3d
Ig_2-2o26Y08
Y:36-112
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]
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Asym.Unit (321 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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