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2NZV
Asym. Unit
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Asym.Unit (64 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
STRUCTURAL MECHANISM FOR THE FINE-TUNING OF CCPA FUNCTION BY THE SMALL MOLECULE EFFECTORS G6P AND FBP
Authors
:
M. A. Schumacher, W. Hillen, R. G. Brennan
Date
:
25 Nov 06 (Deposition) - 01 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : G,L
Biol. Unit 1: G,L (2x)
Keywords
:
Ccpa, Hprser46-P, Ccr, Fructose-Bis-Phosphate, Adjunct Corepressor, Laci-Galr, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
M. A. Schumacher, G. Seidel, W. Hillen, R. G. Brennan
Structural Mechanism For The Fine-Tuning Of Ccpa Function By The Small Molecule Effectors Glucose 6-Phosphate And Fructose 1, 6-Bisphosphate.
J. Mol. Biol. V. 368 1042 2007
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPa)
2a: PHOSPHOSERINE (SEPa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FBP
1
Ligand/Ion
BETA-FRUCTOSE-1,6-DIPHOSPHATE
2
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
3
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE G:73 , PHE G:74 , TYR G:75 , GLN G:100 , TYR G:221 , THR G:247 , GLU G:249 , ASP G:275
BINDING SITE FOR RESIDUE FBP G 2128
2
AC2
SOFTWARE
THR G:313
BINDING SITE FOR RESIDUE SO4 G 745
3
AC3
SOFTWARE
LYS G:195
BINDING SITE FOR RESIDUE SO4 G 945
4
AC4
SOFTWARE
ASN G:152 , ARG G:212 , ASP G:213 , SER G:214 , ILE G:318
BINDING SITE FOR RESIDUE SO4 G 946
5
AC5
SOFTWARE
HIS G:193 , LYS G:198
BINDING SITE FOR RESIDUE SO4 G 966
6
AC6
SOFTWARE
ASP L:11 , SER L:12
BINDING SITE FOR RESIDUE SO4 L 975
7
AC7
SOFTWARE
GLN L:3 , LYS L:4 , THR L:5
BINDING SITE FOR RESIDUE SO4 L 978
8
AC8
SOFTWARE
ARG G:328 , ASP L:11
BINDING SITE FOR RESIDUE SO4 G 995
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PTS_HPR_HIS (L:13-20)
2: PTS_HPR_SER (L:39-54)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PTS_HPR_HIS
PS00369
PTS HPR domain histidine phosphorylation site signature.
PTHP_BACME
13-20
1
L:13-20
2
PTS_HPR_SER
PS00589
PTS HPR domain serine phosphorylation site signature.
PTHP_BACME
39-54
1
L:39-54
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2nzvl_ (L:)
2a: SCOP_d2nzvg_ (G:)
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)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
HPr-like
(51)
Superfamily
:
HPr-like
(50)
Family
:
HPr-like
(45)
Protein domain
:
Histidine-containing phosphocarrier protein (HPr)
(37)
Bacillus megaterium [TaxId: 1404]
(4)
1a
d2nzvl_
L:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like I
(179)
Superfamily
:
Periplasmic binding protein-like I
(179)
Family
:
L-arabinose binding protein-like
(114)
Protein domain
:
Glucose-resistance amylase regulator CcpA, C-terminal domain
(11)
Bacillus megaterium [TaxId: 1404]
(10)
2a
d2nzvg_
G:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peripla_BP_3_2nzvG01 (G:169-331)
2a: PFAM_PTS_HPr_2nzvL01 (L:2-84)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Periplas_BP
(97)
Family
:
Peripla_BP_3
(41)
Bacillus megaterium
(7)
1a
Peripla_BP_3-2nzvG01
G:169-331
Clan
:
no clan defined [family: PTS-HPr]
(26)
Family
:
PTS-HPr
(26)
Bacillus megaterium
(3)
2a
PTS-HPr-2nzvL01
L:2-84
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Asymmetric Unit 1
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