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2NZ9
Biol. Unit 1
Info
Asym.Unit (549 KB)
Biol.Unit 1 (274 KB)
Biol.Unit 2 (274 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE A COMPLEXED WITH MONOCLONAL ANTIBODY AR2
Authors
:
R. C. Stevens, J. W. Arndt
Date
:
22 Nov 06 (Deposition) - 26 Dec 06 (Release) - 17 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.79
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,D (1x)
Biol. Unit 2: B,E,F (1x)
Keywords
:
Botulinum, Neurotoxin, Fab, Protein Antibody Complex, Toxin-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Garcia-Rodriguez, R. Levy, J. W. Arndt, C. M. Forsyth, A. Razai, J. Lou, I. Geren, R. C. Stevens, J. D. Marks
Molecular Evolution Of Antibody Cross-Reactivity For Two Subtypes Of Type A Botulinum Neurotoxin.
Nat. Biotechnol. V. 25 107 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:223 , HIS A:227 , GLU A:262
BINDING SITE FOR RESIDUE ZN A 1
2
AC3
SOFTWARE
GLU A:347
BINDING SITE FOR RESIDUE CA A 1297
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_BXA1_CLOBO_001 (V27A, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_BXA1_CLOBO_001
*
V
27
A
BXA1_CLOBO
---
---
A
V
27
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:220-229)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
BXA1_CLOBO
220-229
1
A:220-229
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d2nz9d2 (D:119-218)
1b: SCOP_d2nz9f2 (F:119-218)
2a: SCOP_d2nz9c2 (C:115-215)
2b: SCOP_d2nz9e2 (E:115-215)
3a: SCOP_d2nz9d1 (D:2-118)
3b: SCOP_d2nz9f1 (F:2-118)
4a: SCOP_d2nz9c1 (C:2-111)
4b: SCOP_d2nz9e1 (E:2-111)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
1a
d2nz9d2
D:119-218
1b
d2nz9f2
F:119-218
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d2nz9c2
C:115-215
2b
d2nz9e2
E:115-215
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Engineered (including hybrid species)
(68)
3a
d2nz9d1
D:2-118
3b
d2nz9f1
F:2-118
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 2 [TaxId: 10090]
(28)
4a
d2nz9c1
C:2-111
4b
d2nz9e1
E:2-111
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2nz9C02 (C:113-216)
1b: CATH_2nz9D01 (D:2-118)
1c: CATH_2nz9F01 (F:2-118)
1d: CATH_2nz9E02 (E:113-216)
1e: CATH_2nz9C01 (C:1-112)
1f: CATH_2nz9E01 (E:1-112)
1g: CATH_2nz9D02 (D:119-218)
1h: CATH_2nz9F02 (F:119-218)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Clostridium botulinum. Organism_taxid: 1491. Strain: type a1 (hall strain). Clostridium botulinum. Organism_taxid: 1491. Cell_line: cho dg44cells.
(2)
1a
2nz9C02
C:113-216
1b
2nz9D01
D:2-118
1c
2nz9F01
F:2-118
1d
2nz9E02
E:113-216
1e
2nz9C01
C:1-112
1f
2nz9E01
E:1-112
1g
2nz9D02
D:119-218
1h
2nz9F02
F:119-218
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_Toxin_R_bind_N_2nz9B01 (B:885-1079)
1b: PFAM_Toxin_R_bind_N_2nz9B02 (B:885-1079)
2a: PFAM_Peptidase_M27_2nz9B03 (B:2-410)
2b: PFAM_Peptidase_M27_2nz9B04 (B:2-410)
3a: PFAM_Toxin_R_bind_C_2nz9B05 (B:1088-1293)
3b: PFAM_Toxin_R_bind_C_2nz9B06 (B:1088-1293)
4a: PFAM_Toxin_trans_2nz9B07 (B:549-866)
4b: PFAM_Toxin_trans_2nz9B08 (B:549-866)
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Clans
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Organisms
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)
(
)
Clan
:
Concanavalin
(293)
Family
:
Toxin_R_bind_N
(27)
Clostridium botulinum
(26)
1a
Toxin_R_bind_N-2nz9B01
B:885-1079
1b
Toxin_R_bind_N-2nz9B02
B:885-1079
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M27
(28)
Clostridium botulinum
(22)
2a
Peptidase_M27-2nz9B03
B:2-410
2b
Peptidase_M27-2nz9B04
B:2-410
Clan
:
Trefoil
(131)
Family
:
Toxin_R_bind_C
(27)
Clostridium botulinum
(26)
3a
Toxin_R_bind_C-2nz9B05
B:1088-1293
3b
Toxin_R_bind_C-2nz9B06
B:1088-1293
Clan
:
no clan defined [family: Toxin_trans]
(11)
Family
:
Toxin_trans
(11)
Clostridium botulinum
(10)
4a
Toxin_trans-2nz9B07
B:549-866
4b
Toxin_trans-2nz9B08
B:549-866
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Asym.Unit (549 KB)
Header - Asym.Unit
Biol.Unit 1 (274 KB)
Header - Biol.Unit 1
Biol.Unit 2 (274 KB)
Header - Biol.Unit 2
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