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2NZ1
Asym. Unit
Info
Asym.Unit (223 KB)
Biol.Unit 1 (147 KB)
Biol.Unit 2 (146 KB)
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(1)
Title
:
VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS68 IN COMPLEX WITH THE CC-CHEMOKINE CCL2/MCP-1
Authors
:
J. M. Alexander-Brett, D. H. Fremont
Date
:
22 Nov 06 (Deposition) - 25 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,D,E,X,Y
Biol. Unit 1: A,B,D,E (1x)
Biol. Unit 2: X,Y (2x)
Keywords
:
Viral Decoy Receptor, Chemokine, Protein-Protein Complex, Viral Protein-Cytokine Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. M. Alexander-Brett, D. H. Fremont
Dual Gpcr And Gag Mimicry By The M3 Chemokine Decoy Receptor.
J. Exp. Med. V. 204 3157 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: SMALL_CYTOKINES_CC (D:11-53,E:11-53,Y:11-53)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SMALL_CYTOKINES_CC
PS00472
Small cytokines (intercrine/chemokine) C-C subfamily signature.
CCL2_HUMAN
34-76
3
D:11-53
E:11-53
Y:11-53
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Exons
(2, 6)
Info
All Exons
Exon 1.2 (D:8-42 | E:8-42 | Y:8-42)
Exon 1.3 (D:42-71 | E:42-71 | Y:42-71)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000225831
1
ENSE00001161448
chr17:
32582313-32582444
132
CCL2_HUMAN
1-26
26
0
-
-
1.2
ENST00000225831
2
ENSE00000713589
chr17:
32583241-32583358
118
CCL2_HUMAN
26-65
40
3
D:8-42
E:8-42
Y:8-42
35
35
35
1.3
ENST00000225831
3
ENSE00001161442
chr17:
32583741-32584222
482
CCL2_HUMAN
65-99
35
3
D:42-71
E:42-71
Y:42-71
30
30
30
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SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2nz1a_ (A:)
1b: SCOP_d2nz1b_ (B:)
1c: SCOP_d2nz1x_ (X:)
2a: SCOP_d2nz1d_ (D:)
2b: SCOP_d2nz1e_ (E:)
2c: SCOP_d2nz1y_ (Y:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral chemokine binding protein m3
(4)
Superfamily
:
Viral chemokine binding protein m3
(4)
Family
:
Viral chemokine binding protein m3
(4)
Protein domain
:
Viral chemokine binding protein m3
(4)
Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
(4)
1a
d2nz1a_
A:
1b
d2nz1b_
B:
1c
d2nz1x_
X:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IL8-like
(118)
Superfamily
:
Interleukin 8-like chemokines
(117)
Family
:
Interleukin 8-like chemokines
(113)
Protein domain
:
automated matches
(22)
Human (Homo sapiens) [TaxId: 9606]
(21)
2a
d2nz1d_
D:
2b
d2nz1e_
E:
2c
d2nz1y_
Y:
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_2nz1D00 (D:8-71)
1b: CATH_2nz1E00 (E:8-71)
1c: CATH_2nz1Y00 (Y:8-71)
2a: CATH_2nz1A01 (A:12-210)
2b: CATH_2nz1B01 (B:12-210)
2c: CATH_2nz1X01 (X:12-210)
3a: CATH_2nz1A02 (A:211-382)
3b: CATH_2nz1B02 (B:211-382)
3c: CATH_2nz1X02 (X:211-382)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
Murine herpesvirus 68 (Murid herpesvirus 4)
(3)
1a
2nz1D00
D:8-71
1b
2nz1E00
E:8-71
1c
2nz1Y00
Y:8-71
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1330, no name defined]
(4)
Murine herpesvirus 68 (Murid herpesvirus 4)
(4)
2a
2nz1A01
A:12-210
2b
2nz1B01
B:12-210
2c
2nz1X01
X:12-210
Homologous Superfamily
:
[code=2.60.40.1340, no name defined]
(4)
Murine herpesvirus 68 (Murid herpesvirus 4)
(4)
3a
2nz1A02
A:211-382
3b
2nz1B02
B:211-382
3c
2nz1X02
X:211-382
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_IL8_2nz1Y01 (Y:8-67)
1b: PFAM_IL8_2nz1Y02 (Y:8-67)
1c: PFAM_IL8_2nz1Y03 (Y:8-67)
2a: PFAM_M3_2nz1X01 (X:14-380)
2b: PFAM_M3_2nz1X02 (X:14-380)
2c: PFAM_M3_2nz1X03 (X:14-380)
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Clan
:
no clan defined [family: IL8]
(55)
Family
:
IL8
(55)
Homo sapiens (Human)
(49)
1a
IL8-2nz1Y01
Y:8-67
1b
IL8-2nz1Y02
Y:8-67
1c
IL8-2nz1Y03
Y:8-67
Clan
:
no clan defined [family: M3]
(3)
Family
:
M3
(3)
Murid herpesvirus 4 (MuHV-4) (Murine gammaherpesvirus 68)
(3)
2a
M3-2nz1X01
X:14-380
2b
M3-2nz1X02
X:14-380
2c
M3-2nz1X03
X:14-380
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Show PDB file:
Asym.Unit (223 KB)
Header - Asym.Unit
Biol.Unit 1 (147 KB)
Header - Biol.Unit 1
Biol.Unit 2 (146 KB)
Header - Biol.Unit 2
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