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2NXB
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (25 KB)
Biol.Unit 2 (25 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN BROMODOMAIN CONTAINING PROTEIN 3 (BRD3)
Authors
:
P. Filippakopoulos, A. Bullock, C. Cooper, K. Keates, G. Berridge, A. P G. Bunkoczi, A. Edwards, C. Arrowsmith, M. Sundstrom, F. Von Delft, S Structural Genomics Consortium (Sgc)
Date
:
17 Nov 06 (Deposition) - 12 Dec 06 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Brd3, Bromodomain Containing Protein 3, Orfx, Ring3 Like Gene, Ring3L, Structural Genomics, Structural Genomics Consortium, Sgc, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Filippakopoulos, S. Picaud, M. Mangos, T. Keates, J. P. Lambert, D. Barsyte-Lovejoy, I. Felletar, R. Volkmer, S. Muller, T. Pawson, A. C. Gingras, C. H. Arrowsmith, S. Knapp
Histone Recognition And Large-Scale Structural Analysis Of The Human Bromodomain Family.
Cell(Cambridge, Mass. ) V. 149 214 2012
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
NA
1
Ligand/Ion
SODIUM ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:36 , GLN A:38 , SER A:97 , ALA A:98 , GLU B:91
BINDING SITE FOR RESIDUE NA A 301
2
AC2
SOFTWARE
TRP A:57 , MET A:125 , HOH A:429 , TRP B:51 , TYR B:60
BINDING SITE FOR RESIDUE EDO A 302
3
AC3
SOFTWARE
VAL B:63 , LEU B:70 , TYR B:73 , ASN B:116 , HOH B:342 , HOH B:384 , HOH B:425
BINDING SITE FOR RESIDUE EDO B 303
4
AC4
SOFTWARE
LEU A:134 , ILE B:76 , ILE B:77 , LYS B:78 , ASN B:79 , ASN B:111
BINDING SITE FOR RESIDUE EDO B 304
5
AC5
SOFTWARE
GLN A:54 , TRP A:96 , HOH A:354 , HOH A:429 , LYS B:87
BINDING SITE FOR RESIDUE EDO B 305
6
AC6
SOFTWARE
GLN A:38 , MET A:140 , GLN A:142 , LYS B:75 , LYS B:78 , ASN B:92
BINDING SITE FOR RESIDUE EDO B 306
7
AC7
SOFTWARE
GLN A:139 , HOH A:342 , HOH A:347 , ILE B:114 , HOH B:312
BINDING SITE FOR RESIDUE EDO A 307
8
AC8
SOFTWARE
ARG B:34 , LYS B:35 , HIS B:74 , ILE B:77 , PRO B:80 , ASN B:93 , HOH B:405
BINDING SITE FOR RESIDUE EDO B 308
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041913 (T36N, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041913
T
36
N
BRD3_HUMAN
Unclassified
---
A/B
T
36
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: BROMODOMAIN_2 (A:51-123,B:51-123|-)
2: BROMODOMAIN_1 (A:56-115,B:56-115|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BROMODOMAIN_2
PS50014
Bromodomain profile.
BRD3_HUMAN
51-123
326-398
2
A:51-123
B:51-123
-
2
BROMODOMAIN_1
PS00633
Bromodomain signature.
BRD3_HUMAN
56-115
331-390
2
A:56-115
B:56-115
-
[
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Exons
(3, 6)
Info
All Exons
Exon 1.5b (A:34-71 | B:23-71)
Exon 1.6b (A:72-117 | B:72-117)
Exon 1.7 (A:118-144 | B:118-143)
View:
Select:
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All Exon Boundaries
1: Boundary 1.2a/1.5b
2: Boundary 1.5b/1.6b
3: Boundary 1.6b/1.7
4: Boundary 1.7/1.8a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000303407
2a
ENSE00001798041
chr9:
136933139-136933067
73
BRD3_HUMAN
-
0
0
-
-
1.5b
ENST00000303407
5b
ENSE00001677558
chr9:
136918712-136918387
326
BRD3_HUMAN
1-71
71
2
A:34-71
B:23-71
38
49
1.6b
ENST00000303407
6b
ENSE00001647906
chr9:
136917565-136917428
138
BRD3_HUMAN
72-117
46
2
A:72-117
B:72-117
46
46
1.7
ENST00000303407
7
ENSE00001616318
chr9:
136916831-136916684
148
BRD3_HUMAN
118-167
50
2
A:118-144
B:118-143
27
26
1.8a
ENST00000303407
8a
ENSE00001628171
chr9:
136915710-136915496
215
BRD3_HUMAN
167-238
72
0
-
-
1.9a
ENST00000303407
9a
ENSE00001723584
chr9:
136913576-136913205
372
BRD3_HUMAN
239-362
124
0
-
-
1.10
ENST00000303407
10
ENSE00001739092
chr9:
136910543-136910415
129
BRD3_HUMAN
363-405
43
0
-
-
1.11a
ENST00000303407
11a
ENSE00001633127
chr9:
136907073-136906882
192
BRD3_HUMAN
406-469
64
0
-
-
1.12
ENST00000303407
12
ENSE00001129684
chr9:
136905391-136905156
236
BRD3_HUMAN
470-548
79
0
-
-
1.13c
ENST00000303407
13c
ENSE00001129681
chr9:
136901446-136901154
293
BRD3_HUMAN
548-646
99
0
-
-
1.14
ENST00000303407
14
ENSE00001129674
chr9:
136899951-136899823
129
BRD3_HUMAN
646-689
44
0
-
-
1.15b
ENST00000303407
15b
ENSE00001129727
chr9:
136898827-136897963
865
BRD3_HUMAN
689-726
38
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2nxba_ (A:)
1b: SCOP_d2nxbb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
automated matches
(169)
Protein domain
:
automated matches
(169)
Human (Homo sapiens) [TaxId: 9606]
(162)
1a
d2nxba_
A:
1b
d2nxbb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Bromodomain_2nxbB01 (B:42-128)
1b: PFAM_Bromodomain_2nxbB02 (B:42-128)
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Clans
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(
)
Clan
:
no clan defined [family: Bromodomain]
(56)
Family
:
Bromodomain
(56)
Homo sapiens (Human)
(44)
1a
Bromodomain-2nxbB01
B:42-128
1b
Bromodomain-2nxbB02
B:42-128
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