PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2NV2
Asym. Unit
Info
Asym.Unit (978 KB)
Biol.Unit 1 (962 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF THE PLP SYNTHASE COMPLEX PDX1/2 (YAAD/E) FROM BACILLUS SUBTILIS
Authors
:
M. Strohmeier, I. Tews, I. Sinning
Date
:
10 Nov 06 (Deposition) - 05 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.12
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
(Beta/Alpha)8-Barrel, 3-Layer(Aba) Sandwich, Plp Synthase Complex, Lyase-Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Strohmeier, T. Raschle, J. Mazurkiewicz, K. Rippe, I. Sinning, T. B. Fitzpatrick, I. Tews
Structure Of A Bacterial Pyridoxal 5'-Phosphate Synthase Complex
Proc. Natl. Acad. Sci. Usa V. 103 19284 2006
[
close entry info
]
Hetero Components
(3, 42)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
3a: GLUTAMINE (GLNa)
3b: GLUTAMINE (GLNb)
3c: GLUTAMINE (GLNc)
3d: GLUTAMINE (GLNd)
3e: GLUTAMINE (GLNe)
3f: GLUTAMINE (GLNf)
3g: GLUTAMINE (GLNg)
3h: GLUTAMINE (GLNh)
3i: GLUTAMINE (GLNi)
3j: GLUTAMINE (GLNj)
3k: GLUTAMINE (GLNk)
3l: GLUTAMINE (GLNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
12
Ligand/Ion
CHLORIDE ION
2
EDO
18
Ligand/Ion
1,2-ETHANEDIOL
3
GLN
12
Mod. Amino Acid
GLUTAMINE
[
close Hetero Component info
]
Sites
(42, 42)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:137 , ARG A:138 , HOH O:6194 , HOH O:6244
BINDING SITE FOR RESIDUE CL A 6001
02
AC2
SOFTWARE
ARG C:137 , ARG C:138 , HOH C:6144 , HOH C:6212 , HOH C:6284
BINDING SITE FOR RESIDUE CL C 6005
03
AC3
SOFTWARE
ARG E:137 , ARG E:138 , HOH E:6142 , HOH E:6150 , HOH E:6345 , HOH W:6353
BINDING SITE FOR RESIDUE CL E 6009
04
AC4
SOFTWARE
ARG G:137 , ARG G:138 , HOH G:6293
BINDING SITE FOR RESIDUE CL G 6013
05
AC5
SOFTWARE
ARG I:137 , ARG I:138 , HOH I:6212 , HOH S:6181 , HOH S:6287 , HOH S:6347
BINDING SITE FOR RESIDUE CL I 6017
06
AC6
SOFTWARE
ARG K:137 , ARG K:138 , HOH K:6130 , HOH K:6236
BINDING SITE FOR RESIDUE CL K 6021
07
AC7
SOFTWARE
ARG M:137 , ARG M:138 , HOH M:6174 , HOH M:6279
BINDING SITE FOR RESIDUE CL M 6025
08
AC8
SOFTWARE
ARG O:137 , ARG O:138 , HOH O:6307
BINDING SITE FOR RESIDUE CL O 6029
09
AC9
SOFTWARE
HOH K:6188 , HOH K:6320 , ARG Q:137 , ARG Q:138
BINDING SITE FOR RESIDUE CL Q 6033
10
BC1
SOFTWARE
ARG S:137 , ARG S:138 , HOH S:6156 , HOH S:6161 , HOH S:6243 , HOH S:6321
BINDING SITE FOR RESIDUE CL S 6037
11
BC2
SOFTWARE
ARG U:137 , ARG U:138 , HOH U:6073 , HOH U:6205 , HOH U:6242 , HOH U:6255
BINDING SITE FOR RESIDUE CL U 6041
12
BC3
SOFTWARE
ARG W:137 , ARG W:138 , HOH W:6141 , HOH W:6157 , HOH W:6307 , HOH W:6374
BINDING SITE FOR RESIDUE CL W 6045
13
BC4
SOFTWARE
ALA A:186 , LYS A:187 , ALA A:191 , PRO A:192 , TYR A:193 , EDO A:6030 , HOH A:6084 , GLY O:190 , PRO O:192
BINDING SITE FOR RESIDUE EDO A 6002
14
BC5
SOFTWARE
HOH A:6096 , GLY B:46 , GLY B:47 , SER B:49 , CYS B:79 , ALA B:80 , ILE B:83 , ARG B:106 , ASN B:107 , ILE B:134 , ARG B:135 , ASN B:170 , HOH B:872 , HOH B:928 , HOH B:2702
BINDING SITE FOR RESIDUE GLN B 6004
15
BC6
SOFTWARE
ALA C:186 , LYS C:187 , ALA C:191 , PRO C:192 , TYR C:193 , EDO C:6026 , HOH C:6102 , GLY M:190 , PRO M:192
BINDING SITE FOR RESIDUE EDO C 6006
16
BC7
SOFTWARE
PRO C:192 , TYR C:193 , GLU C:194 , PRO M:192 , TYR M:193 , GLU M:194 , LEU M:195 , HOH M:6107 , HOH M:6125
BINDING SITE FOR RESIDUE EDO M 6007
17
BC8
SOFTWARE
HOH C:6038 , GLY D:46 , GLY D:47 , SER D:49 , CYS D:79 , ALA D:80 , ILE D:83 , ARG D:106 , ASN D:107 , ILE D:134 , ARG D:135 , ASN D:170 , HOH D:6009 , HOH D:6019
BINDING SITE FOR RESIDUE GLN D 6008
18
BC9
SOFTWARE
LYS E:187 , ALA E:191 , TYR E:193 , GLY W:190 , PRO W:192 , EDO W:6046
BINDING SITE FOR RESIDUE EDO E 6010
19
CC1
SOFTWARE
MET E:16 , HOH E:6118 , GLY F:46 , GLY F:47 , SER F:49 , CYS F:79 , ALA F:80 , ILE F:83 , ARG F:106 , ASN F:107 , ILE F:134 , ARG F:135 , ASN F:170 , HOH F:762 , HOH F:943
BINDING SITE FOR RESIDUE GLN F 6012
20
CC2
SOFTWARE
ALA G:186 , LYS G:187 , ALA G:191 , PRO G:192 , TYR G:193 , GLY U:190 , PRO U:192 , EDO U:6042
BINDING SITE FOR RESIDUE EDO U 6014
21
CC3
SOFTWARE
HOH G:6099 , GLY H:46 , GLY H:47 , SER H:49 , CYS H:79 , ALA H:80 , ILE H:83 , ARG H:106 , ASN H:107 , ILE H:134 , ARG H:135 , ASN H:170 , HOH H:6022 , HOH H:6029
BINDING SITE FOR RESIDUE GLN H 6016
22
CC4
SOFTWARE
ALA I:186 , LYS I:187 , ALA I:191 , PRO I:192 , TYR I:193 , EDO I:6038 , HOH I:6108 , GLY S:190 , PRO S:192
BINDING SITE FOR RESIDUE EDO I 6018
23
CC5
SOFTWARE
GLY J:46 , GLY J:47 , GLU J:48 , SER J:49 , CYS J:79 , ALA J:80 , ILE J:83 , ARG J:106 , ASN J:107 , ILE J:134 , ARG J:135 , ASN J:170 , HOH J:6022 , HOH J:6028 , HOH J:6030
BINDING SITE FOR RESIDUE GLN J 6020
24
CC6
SOFTWARE
ALA K:186 , LYS K:187 , ALA K:191 , TYR K:193 , GLY Q:190 , PRO Q:192 , EDO Q:6034
BINDING SITE FOR RESIDUE EDO K 6022
25
CC7
SOFTWARE
GLY L:46 , GLY L:47 , GLU L:48 , SER L:49 , CYS L:79 , ALA L:80 , ILE L:83 , ARG L:106 , ASN L:107 , ILE L:134 , ARG L:135 , ASN L:170 , HOH L:6028 , HOH L:6030 , HOH L:6039
BINDING SITE FOR RESIDUE GLN L 6024
26
CC8
SOFTWARE
GLY C:190 , PRO C:192 , EDO C:6006 , ALA M:186 , LYS M:187 , ALA M:191 , PRO M:192 , TYR M:193
BINDING SITE FOR RESIDUE EDO C 6026
27
CC9
SOFTWARE
GLY N:46 , GLY N:47 , SER N:49 , CYS N:79 , ALA N:80 , ILE N:83 , ARG N:106 , ASN N:107 , ILE N:134 , ARG N:135 , ASN N:170 , HOH N:6034 , HOH N:6035
BINDING SITE FOR RESIDUE GLN N 6028
28
DC1
SOFTWARE
GLY A:190 , PRO A:192 , EDO A:6002 , ALA O:186 , LYS O:187 , ALA O:191 , PRO O:192 , TYR O:193 , HOH O:6096
BINDING SITE FOR RESIDUE EDO A 6030
29
DC2
SOFTWARE
PRO A:192 , TYR A:193 , GLU A:194 , LEU A:195 , HOH A:6169 , HOH A:6185 , HOH A:6209 , PRO O:192 , TYR O:193 , GLU O:194
BINDING SITE FOR RESIDUE EDO A 6031
30
DC3
SOFTWARE
HOH O:6065 , GLY P:46 , GLY P:47 , GLU P:48 , SER P:49 , CYS P:79 , ALA P:80 , ILE P:83 , ARG P:106 , ASN P:107 , ILE P:134 , ARG P:135 , ASN P:170 , HOH P:6033 , HOH P:6035
BINDING SITE FOR RESIDUE GLN P 6032
31
DC4
SOFTWARE
GLY K:190 , PRO K:192 , EDO K:6022 , ALA Q:186 , LYS Q:187 , ALA Q:191 , PRO Q:192 , TYR Q:193 , HOH Q:6107
BINDING SITE FOR RESIDUE EDO Q 6034
32
DC5
SOFTWARE
PRO K:192 , TYR K:193 , GLU K:194 , PRO Q:192 , TYR Q:193 , GLU Q:194 , LEU Q:195 , HOH Q:6120 , HOH Q:6134 , HOH Q:6170
BINDING SITE FOR RESIDUE EDO Q 6035
33
DC6
SOFTWARE
HOH Q:6098 , GLY R:46 , GLY R:47 , SER R:49 , CYS R:79 , ALA R:80 , ILE R:83 , ARG R:106 , ASN R:107 , ILE R:134 , ARG R:135 , ASN R:170 , HOH R:579 , HOH R:845
BINDING SITE FOR RESIDUE GLN R 6036
34
DC7
SOFTWARE
GLY I:190 , PRO I:192 , EDO I:6018 , ALA S:186 , LYS S:187 , ALA S:191 , TYR S:193 , HOH S:6100
BINDING SITE FOR RESIDUE EDO I 6038
35
DC8
SOFTWARE
PRO I:192 , TYR I:193 , GLU I:194 , LEU I:195 , HOH I:6141 , HOH I:6162 , PRO S:192 , TYR S:193 , GLU S:194
BINDING SITE FOR RESIDUE EDO I 6039
36
DC9
SOFTWARE
GLY T:46 , GLY T:47 , SER T:49 , CYS T:79 , ALA T:80 , ILE T:83 , ARG T:106 , ASN T:107 , ILE T:134 , ARG T:135 , ASN T:170 , HOH T:780 , HOH T:1141 , HOH T:1399
BINDING SITE FOR RESIDUE GLN T 6040
37
EC1
SOFTWARE
GLY G:190 , PRO G:192 , ALA U:186 , LYS U:187 , ALA U:191 , TYR U:193 , EDO U:6014 , HOH U:6080
BINDING SITE FOR RESIDUE EDO U 6042
38
EC2
SOFTWARE
PRO G:192 , TYR G:193 , GLU G:194 , LEU G:195 , HOH G:6177 , HOH G:6180 , PRO U:192 , TYR U:193 , GLU U:194
BINDING SITE FOR RESIDUE EDO G 6043
39
EC3
SOFTWARE
GLY V:46 , GLY V:47 , SER V:49 , CYS V:79 , ALA V:80 , ILE V:83 , ARG V:106 , ASN V:107 , ILE V:134 , ARG V:135 , ASN V:170 , HOH V:406 , HOH V:1637 , HOH V:1731
BINDING SITE FOR RESIDUE GLN V 6044
40
EC4
SOFTWARE
GLY E:190 , PRO E:192 , EDO E:6010 , ALA W:186 , LYS W:187 , ALA W:191 , PRO W:192 , TYR W:193
BINDING SITE FOR RESIDUE EDO W 6046
41
EC5
SOFTWARE
PRO E:192 , TYR E:193 , GLU E:194 , LEU E:195 , HOH E:6132 , HOH E:6172 , HOH E:6230 , PRO W:192 , TYR W:193 , GLU W:194
BINDING SITE FOR RESIDUE EDO E 6047
42
EC6
SOFTWARE
HOH W:6074 , GLY X:46 , GLY X:47 , SER X:49 , CYS X:79 , ALA X:80 , ILE X:83 , ARG X:106 , ASN X:107 , ILE X:134 , ARG X:135 , ASN X:170 , HOH X:6050 , HOH X:6063
BINDING SITE FOR RESIDUE GLN X 6048
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 48)
Info
All PROSITE Patterns/Profiles
1: PDXT_SNO_2 (B:3-188,D:3-188,F:3-188,H:3-188,J:...)
2: PDXS_SNZ_2 (A:9-269,C:9-270,E:9-270,G:9-269,I:...)
3: PDXT_SNO_1 (B:41-51,D:41-51,F:41-51,H:41-51,J:...)
4: PDXS_SNZ_1 (A:205-223,C:205-223,E:205-223,G:20...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDXT_SNO_2
PS51130
PdxT/SNO family profile.
PDXT_BACSU
3-188
12
B:3-188
D:3-188
F:3-188
H:3-188
J:3-188
L:3-188
N:3-188
P:3-188
R:3-188
T:3-188
V:3-188
X:3-188
2
PDXS_SNZ_2
PS51129
PdxS/SNZ family profile.
PDXS_BACSU
9-294
12
A:9-269
C:9-270
E:9-270
G:9-269
I:9-272
K:9-271
M:9-270
O:9-269
Q:9-271
S:9-271
U:9-272
W:9-271
3
PDXT_SNO_1
PS01236
PdxT/SNO family family signature.
PDXT_BACSU
41-51
12
B:41-51
D:41-51
F:41-51
H:41-51
J:41-51
L:41-51
N:41-51
P:41-51
R:41-51
T:41-51
V:41-51
X:41-51
4
PDXS_SNZ_1
PS01235
PdxS/SNZ family signature.
PDXS_BACSU
205-223
12
A:205-223
C:205-223
E:205-223
G:205-223
I:205-223
K:205-223
M:205-223
O:205-223
Q:205-223
S:205-223
U:205-223
W:205-223
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d2nv2b_ (B:)
1b: SCOP_d2nv2d_ (D:)
1c: SCOP_d2nv2v_ (V:)
1d: SCOP_d2nv2x_ (X:)
1e: SCOP_d2nv2f_ (F:)
1f: SCOP_d2nv2h_ (H:)
1g: SCOP_d2nv2j_ (J:)
1h: SCOP_d2nv2l_ (L:)
1i: SCOP_d2nv2n_ (N:)
1j: SCOP_d2nv2p_ (P:)
1k: SCOP_d2nv2r_ (R:)
1l: SCOP_d2nv2t_ (T:)
2a: SCOP_d2nv2a_ (A:)
2b: SCOP_d2nv2i_ (I:)
2c: SCOP_d2nv2k_ (K:)
2d: SCOP_d2nv2m_ (M:)
2e: SCOP_d2nv2o_ (O:)
2f: SCOP_d2nv2q_ (Q:)
2g: SCOP_d2nv2s_ (S:)
2h: SCOP_d2nv2u_ (U:)
2i: SCOP_d2nv2w_ (W:)
2j: SCOP_d2nv2c_ (C:)
2k: SCOP_d2nv2e_ (E:)
2l: SCOP_d2nv2g_ (G:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Class I glutamine amidotransferases (GAT)
(48)
Protein domain
:
automated matches
(3)
Bacillus subtilis [TaxId: 1423]
(1)
1a
d2nv2b_
B:
1b
d2nv2d_
D:
1c
d2nv2v_
V:
1d
d2nv2x_
X:
1e
d2nv2f_
F:
1f
d2nv2h_
H:
1g
d2nv2j_
J:
1h
d2nv2l_
L:
1i
d2nv2n_
N:
1j
d2nv2p_
P:
1k
d2nv2r_
R:
1l
d2nv2t_
T:
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
PdxS-like
(6)
Protein domain
:
automated matches
(5)
Bacillus subtilis [TaxId: 1423]
(2)
2a
d2nv2a_
A:
2b
d2nv2i_
I:
2c
d2nv2k_
K:
2d
d2nv2m_
M:
2e
d2nv2o_
O:
2f
d2nv2q_
Q:
2g
d2nv2s_
S:
2h
d2nv2u_
U:
2i
d2nv2w_
W:
2j
d2nv2c_
C:
2k
d2nv2e_
E:
2l
d2nv2g_
G:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2nv2J00 (J:1-196)
1b: CATH_2nv2X00 (X:1-195)
1c: CATH_2nv2L00 (L:1-192)
1d: CATH_2nv2F00 (F:1-191)
1e: CATH_2nv2D00 (D:1-194)
1f: CATH_2nv2T00 (T:1-194)
1g: CATH_2nv2V00 (V:1-194)
1h: CATH_2nv2B00 (B:1-193)
1i: CATH_2nv2H00 (H:1-193)
1j: CATH_2nv2N00 (N:1-193)
1k: CATH_2nv2P00 (P:1-193)
1l: CATH_2nv2R00 (R:1-193)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Bacillus subtilis. Organism_taxid: 1423. Strain: strain 168.
(1)
1a
2nv2J00
J:1-196
1b
2nv2X00
X:1-195
1c
2nv2L00
L:1-192
1d
2nv2F00
F:1-191
1e
2nv2D00
D:1-194
1f
2nv2T00
T:1-194
1g
2nv2V00
V:1-194
1h
2nv2B00
B:1-193
1i
2nv2H00
H:1-193
1j
2nv2N00
N:1-193
1k
2nv2P00
P:1-193
1l
2nv2R00
R:1-193
[
close CATH info
]
Pfam Domains
(2, 24)
Info
all PFAM domains
1a: PFAM_SNO_2nv2X01 (X:6-189)
1b: PFAM_SNO_2nv2X02 (X:6-189)
1c: PFAM_SNO_2nv2X03 (X:6-189)
1d: PFAM_SNO_2nv2X04 (X:6-189)
1e: PFAM_SNO_2nv2X05 (X:6-189)
1f: PFAM_SNO_2nv2X06 (X:6-189)
1g: PFAM_SNO_2nv2X07 (X:6-189)
1h: PFAM_SNO_2nv2X08 (X:6-189)
1i: PFAM_SNO_2nv2X09 (X:6-189)
1j: PFAM_SNO_2nv2X10 (X:6-189)
1k: PFAM_SNO_2nv2X11 (X:6-189)
1l: PFAM_SNO_2nv2X12 (X:6-189)
2a: PFAM_SOR_SNZ_2nv2W01 (W:4-212)
2b: PFAM_SOR_SNZ_2nv2W02 (W:4-212)
2c: PFAM_SOR_SNZ_2nv2W03 (W:4-212)
2d: PFAM_SOR_SNZ_2nv2W04 (W:4-212)
2e: PFAM_SOR_SNZ_2nv2W05 (W:4-212)
2f: PFAM_SOR_SNZ_2nv2W06 (W:4-212)
2g: PFAM_SOR_SNZ_2nv2W07 (W:4-212)
2h: PFAM_SOR_SNZ_2nv2W08 (W:4-212)
2i: PFAM_SOR_SNZ_2nv2W09 (W:4-212)
2j: PFAM_SOR_SNZ_2nv2W10 (W:4-212)
2k: PFAM_SOR_SNZ_2nv2W11 (W:4-212)
2l: PFAM_SOR_SNZ_2nv2W12 (W:4-212)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Glutaminase_I
(73)
Family
:
SNO
(5)
Bacillus subtilis
(3)
1a
SNO-2nv2X01
X:6-189
1b
SNO-2nv2X02
X:6-189
1c
SNO-2nv2X03
X:6-189
1d
SNO-2nv2X04
X:6-189
1e
SNO-2nv2X05
X:6-189
1f
SNO-2nv2X06
X:6-189
1g
SNO-2nv2X07
X:6-189
1h
SNO-2nv2X08
X:6-189
1i
SNO-2nv2X09
X:6-189
1j
SNO-2nv2X10
X:6-189
1k
SNO-2nv2X11
X:6-189
1l
SNO-2nv2X12
X:6-189
Clan
:
TIM_barrel
(694)
Family
:
SOR_SNZ
(6)
Bacillus subtilis
(2)
2a
SOR_SNZ-2nv2W01
W:4-212
2b
SOR_SNZ-2nv2W02
W:4-212
2c
SOR_SNZ-2nv2W03
W:4-212
2d
SOR_SNZ-2nv2W04
W:4-212
2e
SOR_SNZ-2nv2W05
W:4-212
2f
SOR_SNZ-2nv2W06
W:4-212
2g
SOR_SNZ-2nv2W07
W:4-212
2h
SOR_SNZ-2nv2W08
W:4-212
2i
SOR_SNZ-2nv2W09
W:4-212
2j
SOR_SNZ-2nv2W10
W:4-212
2k
SOR_SNZ-2nv2W11
W:4-212
2l
SOR_SNZ-2nv2W12
W:4-212
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (978 KB)
Header - Asym.Unit
Biol.Unit 1 (962 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2NV2
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
