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Getting 'Exon' information from database.
2NUP
Asym. Unit
Info
Asym.Unit (265 KB)
Biol.Unit 1 (258 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN SEC23A/24A HETERODIMER, COMPLEXED WITH THE SNARE PROTEIN SEC22B
Authors
:
J. D. Mancias, J. Goldberg
Date
:
09 Nov 06 (Deposition) - 22 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Human Copii Sec23/24 Complexed With Sec22, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. D. Mancias, J. Goldberg
The Transport Signal On Sec22 For Packaging Into Copii-Coated Vesicles Is A Conformational Epitope
Mol. Cell V. 26 403 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:61 , CYS A:66 , CYS A:85 , CYS A:88
BINDING SITE FOR RESIDUE ZN A 800
2
AC2
SOFTWARE
CYS B:431 , CYS B:434 , CYS B:452 , CYS B:455
BINDING SITE FOR RESIDUE ZN B 1100
[
close Site info
]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_060311 (Y71Y, chain C, )
2: VAR_060312 (K82K, chain C, )
3: VAR_057343 (R108Q, chain C, )
4: VAR_060313 (R130R, chain C, )
5: VAR_031030 (F382L, chain A, )
6: VAR_037255 (T396M, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_060311
D
71
Y
SC22B_HUMAN
Polymorphism
2596331
C
Y
71
Y
2
UniProt
VAR_060312
T
82
K
SC22B_HUMAN
Polymorphism
2794053
C
K
82
K
3
UniProt
VAR_057343
R
108
Q
SC22B_HUMAN
Polymorphism
2655551
C
R
108
Q
4
UniProt
VAR_060313
C
130
R
SC22B_HUMAN
Polymorphism
2590131
C
R
130
R
5
UniProt
VAR_031030
F
382
L
SC23A_HUMAN
Disease (CLSD)
---
A
F
382
L
6
UniProt
VAR_037255
T
396
M
SC24A_HUMAN
Polymorphism
17851745
B
T
396
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LONGIN (C:6-119)
2: V_SNARE (C:148-157)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LONGIN
PS50859
Longin domain profile.
SC22B_HUMAN
6-119
1
C:6-119
2
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
SC22B_HUMAN
134-194
1
C:148-157
[
close PROSITE info
]
Exons
(37, 37)
Info
All Exons
Exon 1.2b (A:3-74)
Exon 1.3 (A:74-93)
Exon 1.4 (A:94-122)
Exon 1.5a (A:123-201)
Exon 1.6 (A:202-228 (gaps))
Exon 1.7 (A:228-276)
Exon 1.8 (A:277-329)
Exon 1.9 (A:330-368)
Exon 1.10 (A:368-409)
Exon 1.11 (A:410-436)
Exon 1.12 (A:437-464)
Exon 1.13 (A:474-502)
Exon 1.14a (A:502-553 (gaps))
Exon 1.15 (A:554-579)
Exon 1.16 (A:580-633)
Exon 1.17 (A:634-662)
Exon 1.18 (A:663-714 (gaps))
Exon 1.19 (A:715-723)
Exon 1.20 (A:746-764)
Exon 2.6 (B:346-384)
Exon 2.7 (B:384-418)
Exon 2.8a (B:419-461)
Exon 2.9 (B:461-497 (gaps))
Exon 2.10 (B:498-535)
Exon 2.11 (B:535-575)
Exon 2.12a (B:575-593)
Exon 2.14 (B:594-662)
Exon 2.15 (B:666-703)
Exon 2.16 (B:703-756)
Exon 2.17 (B:756-814)
Exon 2.18 (B:814-851)
Exon 2.19 (B:851-909 (gaps))
Exon 2.20 (B:910-955)
Exon 2.21 (B:956-990)
Exon 2.22 (B:991-1021)
Exon 2.23 (B:1022-1056)
Exon 2.24 (B:1056-1093)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1b/1.2b
02: Boundary 1.2b/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5a
05: Boundary 1.5a/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/1.12
12: Boundary 1.12/1.13
13: Boundary 1.13/1.14a
14: Boundary 1.14a/1.15
15: Boundary 1.15/1.16
16: Boundary 1.16/1.17
17: Boundary 1.17/1.18
18: Boundary 1.18/1.19
19: Boundary 1.19/1.20
20: Boundary 1.20/-
21: Boundary 2.5/2.6
22: Boundary 2.6/2.7
23: Boundary 2.7/2.8a
24: Boundary 2.8a/2.9
25: Boundary 2.9/2.10
26: Boundary 2.10/2.11
27: Boundary 2.11/2.12a
28: Boundary 2.12a/2.14
29: Boundary 2.14/2.15
30: Boundary 2.15/2.16
31: Boundary 2.16/2.17
32: Boundary 2.17/2.18
33: Boundary 2.18/2.19
34: Boundary 2.19/2.20
35: Boundary 2.20/2.21
36: Boundary 2.21/2.22
37: Boundary 2.22/2.23
38: Boundary 2.23/2.24
39: Boundary 2.24/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000307712
1b
ENSE00001375759
chr14:
39572439-39572236
204
SC23A_HUMAN
-
0
0
-
-
1.2b
ENST00000307712
2b
ENSE00000889778
chr14:
39565343-39565102
242
SC23A_HUMAN
1-74
74
1
A:3-74
72
1.3
ENST00000307712
3
ENSE00001790491
chr14:
39562448-39562391
58
SC23A_HUMAN
74-93
20
1
A:74-93
20
1.4
ENST00000307712
4
ENSE00000889776
chr14:
39561831-39561745
87
SC23A_HUMAN
94-122
29
1
A:94-122
29
1.5a
ENST00000307712
5a
ENSE00000889775
chr14:
39560917-39560681
237
SC23A_HUMAN
123-201
79
1
A:123-201
79
1.6
ENST00000307712
6
ENSE00000656388
chr14:
39556212-39556133
80
SC23A_HUMAN
202-228
27
1
A:202-228 (gaps)
27
1.7
ENST00000307712
7
ENSE00001665685
chr14:
39555110-39554966
145
SC23A_HUMAN
228-276
49
1
A:228-276
49
1.8
ENST00000307712
8
ENSE00000889773
chr14:
39545297-39545139
159
SC23A_HUMAN
277-329
53
1
A:277-329
53
1.9
ENST00000307712
9
ENSE00000656385
chr14:
39543734-39543619
116
SC23A_HUMAN
330-368
39
1
A:330-368
39
1.10
ENST00000307712
10
ENSE00000656384
chr14:
39536500-39536377
124
SC23A_HUMAN
368-409
42
1
A:368-409
42
1.11
ENST00000307712
11
ENSE00000656383
chr14:
39534197-39534117
81
SC23A_HUMAN
410-436
27
1
A:410-436
27
1.12
ENST00000307712
12
ENSE00000656382
chr14:
39532617-39532528
90
SC23A_HUMAN
437-466
30
1
A:437-464
28
1.13
ENST00000307712
13
ENSE00000656381
chr14:
39531075-39530969
107
SC23A_HUMAN
467-502
36
1
A:474-502
29
1.14a
ENST00000307712
14a
ENSE00000889767
chr14:
39524500-39524347
154
SC23A_HUMAN
502-553
52
1
A:502-553 (gaps)
52
1.15
ENST00000307712
15
ENSE00000656378
chr14:
39517933-39517856
78
SC23A_HUMAN
554-579
26
1
A:554-579
26
1.16
ENST00000307712
16
ENSE00000889765
chr14:
39514528-39514367
162
SC23A_HUMAN
580-633
54
1
A:580-633
54
1.17
ENST00000307712
17
ENSE00000889764
chr14:
39512076-39511990
87
SC23A_HUMAN
634-662
29
1
A:634-662
29
1.18
ENST00000307712
18
ENSE00000656375
chr14:
39510091-39509936
156
SC23A_HUMAN
663-714
52
1
A:663-714 (gaps)
52
1.19
ENST00000307712
19
ENSE00000656374
chr14:
39508300-39508235
66
SC23A_HUMAN
715-736
22
1
A:715-723
9
1.20
ENST00000307712
20
ENSE00001134880
chr14:
39502532-39501124
1409
SC23A_HUMAN
737-765
29
1
A:746-764
19
2.1a
ENST00000398844
1a
ENSE00001345476
chr5:
133984479-133984863
385
SC24A_HUMAN
1-33
33
0
-
-
2.2
ENST00000398844
2
ENSE00001264229
chr5:
133996809-133997276
468
SC24A_HUMAN
33-189
157
0
-
-
2.3
ENST00000398844
3
ENSE00001132099
chr5:
134002513-134002686
174
SC24A_HUMAN
189-247
59
0
-
-
2.4
ENST00000398844
4
ENSE00001132092
chr5:
134007499-134007576
78
SC24A_HUMAN
247-273
27
0
-
-
2.5
ENST00000398844
5
ENSE00001132085
chr5:
134010305-134010465
161
SC24A_HUMAN
273-326
54
0
-
-
2.6
ENST00000398844
6
ENSE00001132080
chr5:
134010735-134010907
173
SC24A_HUMAN
327-384
58
1
B:346-384
39
2.7
ENST00000398844
7
ENSE00001132074
chr5:
134011713-134011815
103
SC24A_HUMAN
384-418
35
1
B:384-418
35
2.8a
ENST00000398844
8a
ENSE00001132071
chr5:
134015292-134015418
127
SC24A_HUMAN
419-461
43
1
B:419-461
43
2.9
ENST00000398844
9
ENSE00001649370
chr5:
134018063-134018172
110
SC24A_HUMAN
461-497
37
1
B:461-497 (gaps)
37
2.10
ENST00000398844
10
ENSE00001006713
chr5:
134022480-134022592
113
SC24A_HUMAN
498-535
38
1
B:498-535
38
2.11
ENST00000398844
11
ENSE00000763424
chr5:
134023871-134023989
119
SC24A_HUMAN
535-575
41
1
B:535-575
41
2.12a
ENST00000398844
12a
ENSE00001639835
chr5:
134028292-134028347
56
SC24A_HUMAN
575-593
19
1
B:575-593
19
2.14
ENST00000398844
14
ENSE00001085933
chr5:
134029417-134029623
207
SC24A_HUMAN
594-662
69
1
B:594-662
69
2.15
ENST00000398844
15
ENSE00001085922
chr5:
134032816-134032936
121
SC24A_HUMAN
663-703
41
1
B:666-703
38
2.16
ENST00000398844
16
ENSE00001085940
chr5:
134033589-134033747
159
SC24A_HUMAN
703-756
54
1
B:703-756
54
2.17
ENST00000398844
17
ENSE00001085920
chr5:
134039449-134039622
174
SC24A_HUMAN
756-814
59
1
B:756-814
59
2.18
ENST00000398844
18
ENSE00001085924
chr5:
134041017-134041127
111
SC24A_HUMAN
814-851
38
1
B:814-851
38
2.19
ENST00000398844
19
ENSE00001085927
chr5:
134044403-134044578
176
SC24A_HUMAN
851-909
59
1
B:851-909 (gaps)
59
2.20
ENST00000398844
20
ENSE00001085918
chr5:
134050714-134050851
138
SC24A_HUMAN
910-955
46
1
B:910-955
46
2.21
ENST00000398844
21
ENSE00001085934
chr5:
134053759-134053863
105
SC24A_HUMAN
956-990
35
1
B:956-990
35
2.22
ENST00000398844
22
ENSE00001085939
chr5:
134056688-134056780
93
SC24A_HUMAN
991-1021
31
1
B:991-1021
31
2.23
ENST00000398844
23
ENSE00001085930
chr5:
134059257-134059360
104
SC24A_HUMAN
1022-1056
35
1
B:1022-1056
35
2.24
ENST00000398844
24
ENSE00001085928
chr5:
134060670-134063513
2844
SC24A_HUMAN
1056-1093
38
1
B:1056-1093
38
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2nupA03 (A:127-399)
2a: CATH_2nupA05 (A:620-746)
3a: CATH_2nupA01 (A:3-54,A:116-126,A:400-504)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.410, no name defined]
(87)
Human (Homo sapiens)
(66)
1a
2nupA03
A:127-399
Topology
:
Severin
(74)
Homologous Superfamily
:
Severin
(74)
Human (Homo sapiens)
(36)
2a
2nupA05
A:620-746
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
beta-sandwich domain of Sec23/24
(9)
Human (Homo sapiens)
(6)
3a
2nupA01
A:3-54,A:116-126,A:400-504
[
close CATH info
]
Pfam Domains
(7, 12)
Info
all PFAM domains
1a: PFAM_Gelsolin_2nupA01 (A:628-718)
1b: PFAM_Gelsolin_2nupB01 (B:964-1039)
2a: PFAM_Synaptobrevin_2nupC01 (C:131-157)
3a: PFAM_Longin_2nupC02 (C:36-118)
4a: PFAM_Sec23_BS_2nupA02 (A:401-504)
4b: PFAM_Sec23_BS_2nupB02 (B:744-828)
5a: PFAM_Sec23_helical_2nupA03 (A:519-619)
5b: PFAM_Sec23_helical_2nupB03 (B:840-942)
6a: PFAM_zf_Sec23_Sec24_2nupA04 (A:57-98)
6b: PFAM_zf_Sec23_Sec24_2nupB04 (B:427-465)
7a: PFAM_Sec23_trunk_2nupA05 (A:126-390)
7b: PFAM_Sec23_trunk_2nupB05 (B:501-739)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ADF
(44)
Family
:
Gelsolin
(23)
Homo sapiens (Human)
(13)
1a
Gelsolin-2nupA01
A:628-718
1b
Gelsolin-2nupB01
B:964-1039
Clan
:
SNARE-fusion
(10)
Family
:
Synaptobrevin
(7)
Homo sapiens (Human)
(2)
2a
Synaptobrevin-2nupC01
C:131-157
Clan
:
no clan defined [family: Longin]
(4)
Family
:
Longin
(4)
Homo sapiens (Human)
(2)
3a
Longin-2nupC02
C:36-118
Clan
:
no clan defined [family: Sec23_BS]
(6)
Family
:
Sec23_BS
(6)
Homo sapiens (Human)
(2)
4a
Sec23_BS-2nupA02
A:401-504
4b
Sec23_BS-2nupB02
B:744-828
Clan
:
no clan defined [family: Sec23_helical]
(6)
Family
:
Sec23_helical
(6)
Homo sapiens (Human)
(2)
5a
Sec23_helical-2nupA03
A:519-619
5b
Sec23_helical-2nupB03
B:840-942
Clan
:
no clan defined [family: zf-Sec23_Sec24]
(8)
Family
:
zf-Sec23_Sec24
(8)
Homo sapiens (Human)
(4)
6a
zf-Sec23_Sec24-2nupA04
A:57-98
6b
zf-Sec23_Sec24-2nupB04
B:427-465
Clan
:
vWA-like
(60)
Family
:
Sec23_trunk
(6)
Homo sapiens (Human)
(2)
7a
Sec23_trunk-2nupA05
A:126-390
7b
Sec23_trunk-2nupB05
B:501-739
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Asym.Unit (265 KB)
Header - Asym.Unit
Biol.Unit 1 (258 KB)
Header - Biol.Unit 1
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