PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2NT2
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (26 KB)
Biol.Unit 3 (26 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF SLINGSHOT PHOSPHATASE 2
Authors
:
S. K. Jung, D. G. Jeong, T. S. Yoon, J. H. Kim, S. E. Ryu, S. J. Kim
Date
:
06 Nov 06 (Deposition) - 05 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Alpha/Beta Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. K. Jung, D. G. Jeong, T. S. Yoon, J. H. Kim, S. E. Ryu, S. J. Kim
Crystal Structure Of Human Slingshot Phosphatase 2.
Proteins V. 68 408 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:361 , SER A:392 , LYS A:393 , MET A:394 , GLY A:395 , VAL A:396 , SER A:397 , ARG A:398
BINDING SITE FOR RESIDUE SO4 A 101
2
AC2
SOFTWARE
ASP B:361 , SER B:392 , LYS B:393 , MET B:394 , GLY B:395 , VAL B:396 , SER B:397 , ARG B:398
BINDING SITE FOR RESIDUE SO4 B 101
3
AC3
SOFTWARE
HOH C:66 , ASP C:361 , SER C:392 , LYS C:393 , MET C:394 , GLY C:395 , VAL C:396 , SER C:397 , ARG C:398
BINDING SITE FOR RESIDUE SO4 C 101
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 9)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_DUAL (A:307-447,B:307-447,C:307-447)
2: TYR_PHOSPHATASE_2 (A:372-426,B:372-426,C:372-426)
3: TYR_PHOSPHATASE_1 (A:390-400,B:390-400,C:390-400)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_DUAL
PS50054
Dual specificity protein phosphatase family profile.
SSH2_HUMAN
307-447
3
A:307-447
B:307-447
C:307-447
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
SSH2_HUMAN
372-426
3
A:372-426
B:372-426
C:372-426
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
SSH2_HUMAN
390-400
3
A:390-400
B:390-400
C:390-400
[
close PROSITE info
]
Exons
(4, 12)
Info
All Exons
Exon 1.11 (A:307-317 | B:307-317 | C:307-317)
Exon 1.12 (A:318-333 | B:318-333 | C:318-333)
Exon 1.13 (A:333-382 | B:333-382 | C:333-382)
Exon 1.14a (A:382-448 | B:382-448 | C:382-448)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.10/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/1.13
4: Boundary 1.13/1.14a
5: Boundary 1.14a/1.15
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000269033
1a
ENSE00001878927
chr17:
28257170-28256956
215
SSH2_HUMAN
1-21
21
0
-
-
1.2
ENST00000269033
2
ENSE00001227577
chr17:
28120955-28120912
44
SSH2_HUMAN
22-36
15
0
-
-
1.3
ENST00000269033
3
ENSE00001227617
chr17:
28030080-28029977
104
SSH2_HUMAN
36-71
36
0
-
-
1.4
ENST00000269033
4
ENSE00001227612
chr17:
28022541-28022477
65
SSH2_HUMAN
71-92
22
0
-
-
1.5
ENST00000269033
5
ENSE00001302334
chr17:
28011702-28011581
122
SSH2_HUMAN
93-133
41
0
-
-
1.6
ENST00000269033
6
ENSE00001227597
chr17:
28004759-28004691
69
SSH2_HUMAN
133-156
24
0
-
-
1.7
ENST00000269033
7
ENSE00001227587
chr17:
28003903-28003838
66
SSH2_HUMAN
156-178
23
0
-
-
1.9
ENST00000269033
9
ENSE00001227567
chr17:
27999147-27998953
195
SSH2_HUMAN
178-243
66
0
-
-
1.10
ENST00000269033
10
ENSE00001227557
chr17:
27994241-27994148
94
SSH2_HUMAN
243-274
32
0
-
-
1.11
ENST00000269033
11
ENSE00001227550
chr17:
27994013-27993885
129
SSH2_HUMAN
275-317
43
3
A:307-317
B:307-317
C:307-317
11
11
11
1.12
ENST00000269033
12
ENSE00001128700
chr17:
27982625-27982579
47
SSH2_HUMAN
318-333
16
3
A:318-333
B:318-333
C:318-333
16
16
16
1.13
ENST00000269033
13
ENSE00001128689
chr17:
27977818-27977672
147
SSH2_HUMAN
333-382
50
3
A:333-382
B:333-382
C:333-382
50
50
50
1.14a
ENST00000269033
14a
ENSE00001295166
chr17:
27975362-27975162
201
SSH2_HUMAN
382-449
68
3
A:382-448
B:382-448
C:382-448
67
67
67
1.15
ENST00000269033
15
ENSE00000947602
chr17:
27963820-27962986
835
SSH2_HUMAN
449-727
279
0
-
-
1.16
ENST00000269033
16
ENSE00001290380
chr17:
27959949-27952956
6994
SSH2_HUMAN
728-1423
696
0
-
-
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2nt2a_ (A:)
1b: SCOP_d2nt2b_ (B:)
1c: SCOP_d2nt2c_ (C:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d2nt2a_
A:
1b
d2nt2b_
B:
1c
d2nt2c_
C:
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2nt2A00 (A:307-448)
1b: CATH_2nt2B00 (B:307-448)
1c: CATH_2nt2C00 (C:307-448)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
2nt2A00
A:307-448
1b
2nt2B00
B:307-448
1c
2nt2C00
C:307-448
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_DSPc_2nt2C01 (C:315-445)
1b: PFAM_DSPc_2nt2C02 (C:315-445)
1c: PFAM_DSPc_2nt2C03 (C:315-445)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Phosphatase
(121)
Family
:
DSPc
(22)
Homo sapiens (Human)
(13)
1a
DSPc-2nt2C01
C:315-445
1b
DSPc-2nt2C02
C:315-445
1c
DSPc-2nt2C03
C:315-445
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (78 KB)
Header - Asym.Unit
Biol.Unit 1 (26 KB)
Header - Biol.Unit 1
Biol.Unit 2 (26 KB)
Header - Biol.Unit 2
Biol.Unit 3 (26 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2NT2
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
