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2NSU
Asym. Unit
Info
Asym.Unit (208 KB)
Biol.Unit 1 (203 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ECTODOMAIN OF HUMAN TRANSFERRIN RECEPTOR FITTED INTO A CRYO-EM RECONSTRUCTION OF CANINE PARVOVIRUS AND FELINE TRANSFERRIN RECEPTOR COMPLEX
Authors
:
S. Hafenstein, V. A. Kostyuchenko, M. G. Rossmann
Date
:
06 Nov 06 (Deposition) - 27 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
27.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferrin Receptor, Virus-Receptor Complex, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Hafenstein, L. M. Palermo, V. A. Kostyuchenko, C. Xiao, M. C. Morais, C. D. Nelson, V. D. Bowman, A. J. Battisti, P. R. Chipman, C. R. Parrish, M. G. Rossmann
Asymmetric Binding Of Transferrin Receptor To Parvovirus Capsids.
Proc. Natl. Acad. Sci. Usa V. 104 6585 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_012737 (S142S, chain A/B, )
2: VAR_051806 (L212V, chain A/B, )
3: VAR_051807 (G420S, chain A/B, )
4: VAR_051808 (R677H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012737
G
142
S
TFR1_HUMAN
Polymorphism
3817672
A/B
S
142
S
2
UniProt
VAR_051806
L
212
V
TFR1_HUMAN
Polymorphism
41301381
A/B
L
212
V
3
UniProt
VAR_051807
G
420
S
TFR1_HUMAN
Polymorphism
41295879
A/B
G
420
S
4
UniProt
VAR_051808
R
677
H
TFR1_HUMAN
Polymorphism
41298067
A/B
R
677
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(16, 32)
Info
All Exons
Exon 1.5 (A:122-145 | B:122-145)
Exon 1.6 (A:145-195 | B:145-195)
Exon 1.7b (A:195-229 | B:195-229)
Exon 1.8b (A:230-267 | B:230-267)
Exon 1.9 (A:268-300 | B:268-300)
Exon 1.10b (A:301-347 | B:301-347)
Exon 1.11a (A:347-400 | B:347-400)
Exon 1.12 (A:400-440 | B:400-440)
Exon 1.14c (A:440-468 | B:440-468)
Exon 1.14d (A:469-490 | B:469-490)
Exon 1.15c (A:490-512 | B:490-512)
Exon 1.16b (A:513-532 | B:513-532)
Exon 1.17b (A:532-559 | B:532-559)
Exon 1.18c (A:560-633 | B:560-633)
Exon 1.19c (A:634-680 | B:634-680)
Exon 1.20a (A:681-760 | B:681-760)
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All Exon Boundaries
01: Boundary 1.3/1.5
02: Boundary 1.5/1.6
03: Boundary 1.6/1.7b
04: Boundary 1.7b/1.8b
05: Boundary 1.8b/1.9
06: Boundary 1.9/1.10b
07: Boundary 1.10b/1.11a
08: Boundary 1.11a/1.12
09: Boundary 1.12/1.14c
10: Boundary 1.14c/1.14d
11: Boundary 1.14d/1.15c
12: Boundary 1.15c/1.16b
13: Boundary 1.16b/1.17b
14: Boundary 1.17b/1.18c
15: Boundary 1.18c/1.19c
16: Boundary 1.19c/1.20a
17: Boundary 1.20a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000392396
1e
ENSE00001511658
chr3:
195808961-195808702
260
TFR1_HUMAN
-
0
0
-
-
1.2
ENST00000392396
2
ENSE00002184017
chr3:
195803993-195803935
59
TFR1_HUMAN
1-12
12
0
-
-
1.3
ENST00000392396
3
ENSE00000336901
chr3:
195802231-195802030
202
TFR1_HUMAN
13-80
68
0
-
-
1.5
ENST00000392396
5
ENSE00001645063
chr3:
195800996-195800801
196
TFR1_HUMAN
80-145
66
2
A:122-145
B:122-145
24
24
1.6
ENST00000392396
6
ENSE00001615518
chr3:
195799023-195798874
150
TFR1_HUMAN
145-195
51
2
A:145-195
B:145-195
51
51
1.7b
ENST00000392396
7b
ENSE00000781814
chr3:
195798369-195798267
103
TFR1_HUMAN
195-229
35
2
A:195-229
B:195-229
35
35
1.8b
ENST00000392396
8b
ENSE00000336905
chr3:
195796439-195796326
114
TFR1_HUMAN
230-267
38
2
A:230-267
B:230-267
38
38
1.9
ENST00000392396
9
ENSE00000781817
chr3:
195795001-195794903
99
TFR1_HUMAN
268-300
33
2
A:268-300
B:268-300
33
33
1.10b
ENST00000392396
10b
ENSE00000781818
chr3:
195794528-195794389
140
TFR1_HUMAN
301-347
47
2
A:301-347
B:301-347
47
47
1.11a
ENST00000392396
11a
ENSE00000781819
chr3:
195792471-195792314
158
TFR1_HUMAN
347-400
54
2
A:347-400
B:347-400
54
54
1.12
ENST00000392396
12
ENSE00000781821
chr3:
195791299-195791180
120
TFR1_HUMAN
400-440
41
2
A:400-440
B:400-440
41
41
1.14c
ENST00000392396
14c
ENSE00001189905
chr3:
195789810-195789725
86
TFR1_HUMAN
440-468
29
2
A:440-468
B:440-468
29
29
1.14d
ENST00000392396
14d
ENSE00000781823
chr3:
195789516-195789453
64
TFR1_HUMAN
469-490
22
2
A:469-490
B:469-490
22
22
1.15c
ENST00000392396
15c
ENSE00000781824
chr3:
195787118-195787051
68
TFR1_HUMAN
490-512
23
2
A:490-512
B:490-512
23
23
1.16b
ENST00000392396
16b
ENSE00000781826
chr3:
195785503-195785445
59
TFR1_HUMAN
513-532
20
2
A:513-532
B:513-532
20
20
1.17b
ENST00000392396
17b
ENSE00000781827
chr3:
195785236-195785155
82
TFR1_HUMAN
532-559
28
2
A:532-559
B:532-559
28
28
1.18c
ENST00000392396
18c
ENSE00000781828
chr3:
195782172-195781951
222
TFR1_HUMAN
560-633
74
2
A:560-633
B:560-633
74
74
1.19c
ENST00000392396
19c
ENSE00000781829
chr3:
195780429-195780289
141
TFR1_HUMAN
634-680
47
2
A:634-680
B:634-680
47
47
1.20a
ENST00000392396
20a
ENSE00001405345
chr3:
195779055-195776347
2709
TFR1_HUMAN
681-760
80
2
A:681-760
B:681-760
80
80
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SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2nsua1 (A:609-760)
1b: SCOP_d2nsub1 (B:609-760)
2a: SCOP_d2nsua3 (A:122-189,A:383-608)
2b: SCOP_d2nsub3 (B:122-189,B:383-608)
3a: SCOP_d2nsua2 (A:190-382)
3b: SCOP_d2nsub2 (B:190-382)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
N-cbl like
(37)
Superfamily
:
Transferrin receptor-like dimerisation domain
(18)
Family
:
Transferrin receptor-like dimerisation domain
(18)
Protein domain
:
Transferrin receptor ectodomain, C-terminal domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2nsua1
A:609-760
1b
d2nsub1
B:609-760
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
FolH catalytic domain-like
(18)
Protein domain
:
Transferrin receptor ectodomain, protease-like domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d2nsua3
A:122-189,A:383-608
2b
d2nsub3
B:122-189,B:383-608
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
PA domain
(18)
Family
:
PA domain
(18)
Protein domain
:
Transferrin receptor ectodomain, apical domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
3a
d2nsua2
A:190-382
3b
d2nsub2
B:190-382
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Peptidase_M28_2nsuB01 (B:400-579)
1b: PFAM_Peptidase_M28_2nsuB02 (B:400-579)
2a: PFAM_PA_2nsuB03 (B:223-346)
2b: PFAM_PA_2nsuB04 (B:223-346)
3a: PFAM_TFR_dimer_2nsuB05 (B:636-752)
3b: PFAM_TFR_dimer_2nsuB06 (B:636-752)
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Clans
(
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(
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MH
(119)
Family
:
Peptidase_M28
(38)
Homo sapiens (Human)
(30)
1a
Peptidase_M28-2nsuB01
B:400-579
1b
Peptidase_M28-2nsuB02
B:400-579
Clan
:
no clan defined [family: PA]
(15)
Family
:
PA
(15)
Homo sapiens (Human)
(12)
2a
PA-2nsuB03
B:223-346
2b
PA-2nsuB04
B:223-346
Clan
:
no clan defined [family: TFR_dimer]
(12)
Family
:
TFR_dimer
(12)
Homo sapiens (Human)
(12)
3a
TFR_dimer-2nsuB05
B:636-752
3b
TFR_dimer-2nsuB06
B:636-752
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Asymmetric Unit 1
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Asym.Unit (208 KB)
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