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2NR6
Asym. Unit
Info
Asym.Unit (214 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF ANTIBODY AND THE ALLERGEN BLA G 2
Authors
:
M. Li, A. Gustchina, A. Wlodawer, A. Pomes, S. Wunschmann
Date
:
01 Nov 06 (Deposition) - 19 Feb 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.81
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,D (1x)
Biol. Unit 2: B,E,F (1x)
Keywords
:
Bla G 2, Fab, Hydrolase-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Li, A. Gustchina, J. Alexandratos, A. Wlodawer, S. Wunschmann, C. L. Kepley, M. D. Chapman, A. Pomes
Crystal Structure Of A Dimerized Cockroach Allergen Bla G 2 Complexed With A Monoclonal Antibody.
J. Biol. Chem. V. 283 22806 2008
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: S-OXY CYSTEINE (CSXa)
1b: S-OXY CYSTEINE (CSXb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSX
2
Mod. Amino Acid
S-OXY CYSTEINE
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:268 , ILE B:269 , SER B:270 , TYR B:273 , HIS B:308 , NAG B:502 , LYS E:24
BINDING SITE FOR RESIDUE NAG B 501
2
AC2
SOFTWARE
NAG B:501
BINDING SITE FOR RESIDUE NAG B 502
3
AC3
SOFTWARE
ASN A:268 , SER A:270 , TYR A:273 , HIS A:308 , TYR A:309 , NAG A:502 , LYS C:24
BINDING SITE FOR RESIDUE NAG A 501
4
AC4
SOFTWARE
NAG A:501
BINDING SITE FOR RESIDUE NAG A 502
5
AC5
SOFTWARE
ASN A:314 , GLU A:316 , ASN A:317 , HOH A:616 , HOH A:623
BINDING SITE FOR RESIDUE NAG A 601
6
AC6
SOFTWARE
ASN B:314 , GLU B:316 , ASN B:317
BINDING SITE FOR RESIDUE NAG B 601
7
AC7
SOFTWARE
HIS A:155 , HIS A:161 , ASP A:303 , ASP A:307
BINDING SITE FOR RESIDUE ZN A 602
8
AC8
SOFTWARE
TYR B:14 , HIS B:155 , HIS B:161 , ASP B:303 , ASP B:307
BINDING SITE FOR RESIDUE ZN B 602
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (A:14-323,B:14-323)
2: IG_MHC (C:192-198,E:192-198)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
ASP2_BLAGE
39-346
2
A:14-323
B:14-323
2
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
2
C:192-198
E:192-198
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d2nr6a_ (A:)
1b: SCOP_d2nr6b_ (B:)
2a: SCOP_d2nr6c1 (C:1-107)
2b: SCOP_d2nr6e1 (E:1-107)
3a: SCOP_d2nr6c2 (C:108-211)
3b: SCOP_d2nr6e2 (E:108-211)
4a: SCOP_d2nr6d1 (D:117-213)
4b: SCOP_d2nr6f1 (F:117-213)
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Classes
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)
(
)
Folds
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Blattella germanica [TaxId: 6973]
(3)
1a
d2nr6a_
A:
1b
d2nr6b_
B:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
2a
d2nr6c1
C:1-107
2b
d2nr6e1
E:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
3a
d2nr6c2
C:108-211
3b
d2nr6e2
E:108-211
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
4a
d2nr6d1
D:117-213
4b
d2nr6f1
F:117-213
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2nr6C02 (C:109-211)
1b: CATH_2nr6E02 (E:109-211)
1c: CATH_2nr6C01 (C:1-108)
1d: CATH_2nr6E01 (E:1-108)
1e: CATH_2nr6D01 (D:1-116)
1f: CATH_2nr6F01 (F:1-116)
1g: CATH_2nr6D02 (D:117-213)
1h: CATH_2nr6F02 (F:117-213)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
German cockroach (Blattella germanica)
(1)
1a
2nr6C02
C:109-211
1b
2nr6E02
E:109-211
1c
2nr6C01
C:1-108
1d
2nr6E01
E:1-108
1e
2nr6D01
D:1-116
1f
2nr6F01
F:1-116
1g
2nr6D02
D:117-213
1h
2nr6F02
F:117-213
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Asp_2nr6B01 (B:13-325)
1b: PFAM_Asp_2nr6B02 (B:13-325)
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Clans
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Organisms
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)
(
)
Clan
:
Peptidase_AA
(368)
Family
:
Asp
(155)
Blattella germanica (German cockroach) (Blatta germanica)
(2)
1a
Asp-2nr6B01
B:13-325
1b
Asp-2nr6B02
B:13-325
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Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (214 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (106 KB)
Header - Biol.Unit 2
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