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2NQR
Asym. Unit
Info
Asym.Unit (267 KB)
Biol.Unit 1 (260 KB)
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(1)
Title
:
MOEA D142N
Authors
:
J. Nicolas, S. Xiang, H. Schindelin, K. V. Rajagopalan
Date
:
31 Oct 06 (Deposition) - 16 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Molybdopterin, Mpt, Moco, Molybdenum, Moea, Moga, Gephyrin, Cnx1, Cinnamon, Biosynthetic Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. D. Nichols, S. Xiang, H. Schindelin, K. V. Rajagopalan
Mutational Analysis Of Escherichia Coli Moea: Two Functiona Activities Map To The Active Site Cleft.
Biochemistry V. 46 78 2007
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Hetero Components
(1, 18)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
18
Ligand/Ion
GLYCEROL
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:187 , ASP A:228 , GOL A:902 , HOH A:936 , HOH A:1211 , HOH A:1216 , HOH A:1293 , HOH A:1332 , GLY B:83 , GLN B:84
BINDING SITE FOR RESIDUE GOL A 901
02
AC2
SOFTWARE
GLY A:186 , ASP A:187 , GLU A:188 , ASP A:228 , GOL A:901 , GOL A:906 , HOH A:1007 , HOH A:1081 , ALA B:82 , GLN B:84
BINDING SITE FOR RESIDUE GOL A 902
03
AC3
SOFTWARE
GLY B:37 , VAL B:178 , GLY B:217 , HOH B:933 , HOH B:985 , HOH B:1132 , HOH B:1208
BINDING SITE FOR RESIDUE GOL B 903
04
AC4
SOFTWARE
ASP A:203 , THR A:204 , ASN A:205 , GLY A:251 , GLY A:299 , PRO A:301 , HOH A:925 , HOH A:1271
BINDING SITE FOR RESIDUE GOL A 904
05
AC5
SOFTWARE
GLY A:37 , ARG A:176 , VAL A:178 , SER A:320 , HOH A:943
BINDING SITE FOR RESIDUE GOL A 905
06
AC6
SOFTWARE
GLY A:252 , ASP A:259 , TYR A:260 , GOL A:902 , HOH A:1081 , HOH A:1200
BINDING SITE FOR RESIDUE GOL A 906
07
AC7
SOFTWARE
ALA A:235 , ALA A:236 , GLU A:239 , HOH A:923 , ILE B:225 , ILE B:226 , ARG B:227
BINDING SITE FOR RESIDUE GOL A 907
08
AC8
SOFTWARE
PHE A:81 , ALA A:82 , GLY A:83 , ASP B:121 , ASP B:187 , GLU B:188 , ASP B:228 , HOH B:976 , HOH B:994
BINDING SITE FOR RESIDUE GOL B 908
09
AC9
SOFTWARE
SER B:378 , LEU B:379 , GLY B:380 , HOH B:987 , HOH B:1002 , HOH B:1047 , HOH B:1297
BINDING SITE FOR RESIDUE GOL B 909
10
BC1
SOFTWARE
PRO A:23 , LYS A:318 , ASN A:322 , THR A:323 , HOH A:928
BINDING SITE FOR RESIDUE GOL A 910
11
BC2
SOFTWARE
ASP A:43 , VAL A:44 , VAL A:45 , ILE A:169 , HOH A:947 , HOH A:1117 , HOH A:1261
BINDING SITE FOR RESIDUE GOL A 911
12
BC3
SOFTWARE
ASN A:381 , GLY A:410 , HOH A:1109 , HOH A:1251
BINDING SITE FOR RESIDUE GOL A 912
13
BC4
SOFTWARE
SER A:290 , HOH A:1108 , HOH A:1163 , HOH A:1230 , ILE B:238 , GLU B:239 , SER B:242 , HOH B:998 , HOH B:1089
BINDING SITE FOR RESIDUE GOL B 913
14
BC5
SOFTWARE
PHE A:374 , SER A:375 , HOH A:1184 , PHE B:150 , VAL B:163 , HOH B:966 , HOH B:1251
BINDING SITE FOR RESIDUE GOL A 914
15
BC6
SOFTWARE
ASP A:43 , GLU A:118 , THR A:127 , HOH A:1308 , HOH A:1345
BINDING SITE FOR RESIDUE GOL A 915
16
BC7
SOFTWARE
ASN B:381 , PRO B:403 , HOH B:1062 , HOH B:1204 , HOH B:1209
BINDING SITE FOR RESIDUE GOL B 916
17
BC8
SOFTWARE
ARG A:206 , LEU A:207 , ASN A:222 , HOH A:927 , HOH A:1132 , VAL B:33
BINDING SITE FOR RESIDUE GOL A 917
18
BC9
SOFTWARE
PRO A:31 , VAL A:33 , GLN A:34 , ASP A:229 , HOH A:1093 , HOH A:1104
BINDING SITE FOR RESIDUE GOL A 918
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MOCF_BIOSYNTHESIS_2 (A:254-287,B:254-287)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MOCF_BIOSYNTHESIS_2
PS01079
Molybdenum cofactor biosynthesis proteins signature 2.
MOEA_ECOLI
254-287
2
A:254-287
B:254-287
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2nqra1 (A:327-410)
1b: SCOP_d2nqrb1 (B:327-409)
2a: SCOP_d2nqra2 (A:7-177)
2b: SCOP_d2nqrb2 (B:7-177)
3a: SCOP_d2nqra3 (A:178-326)
3b: SCOP_d2nqrb3 (B:178-326)
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)
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(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
MoeA C-terminal domain-like
(20)
Family
:
MoeA C-terminal domain-like
(20)
Protein domain
:
Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain
(17)
Escherichia coli [TaxId: 562]
(14)
1a
d2nqra1
A:327-410
1b
d2nqrb1
B:327-409
Fold
:
MoeA N-terminal region -like
(20)
Superfamily
:
MoeA N-terminal region -like
(20)
Family
:
MoeA N-terminal region -like
(20)
Protein domain
:
Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains
(17)
Escherichia coli [TaxId: 562]
(14)
2a
d2nqra2
A:7-177
2b
d2nqrb2
B:7-177
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Molybdenum cofactor biosynthesis proteins
(49)
Superfamily
:
Molybdenum cofactor biosynthesis proteins
(49)
Family
:
MoeA central domain-like
(20)
Protein domain
:
MoeA, central domain
(17)
Escherichia coli [TaxId: 562]
(14)
3a
d2nqra3
A:178-326
3b
d2nqrb3
B:178-326
[
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]
CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_2nqrB01 (B:7-26,B:176-328,B:403-409)
2a: CATH_2nqrB02 (B:27-50,B:143-175)
3a: CATH_2nqrB04 (B:329-402)
4a: CATH_2nqrB03 (B:51-142)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Molybdenum Cofactor Biosythetic Enzyme; Chain A
(34)
Homologous Superfamily
:
Molybdenum Cofactor Biosythetic Enzyme; Chain A
(34)
Escherichia coli. Organism_taxid: 562.
(9)
1a
2nqrB01
B:7-26,B:176-328,B:403-409
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Molybdopterin biosynthesis moea protein, domain 2
(16)
Homologous Superfamily
:
Molybdopterin biosynthesis moea protein, domain 2
(16)
Escherichia coli. Organism_taxid: 562.
(7)
2a
2nqrB02
B:27-50,B:143-175
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Beta-clip
(16)
Homologous Superfamily
:
MoeA C-terminal domain-like
(16)
Escherichia coli. Organism_taxid: 562.
(7)
3a
2nqrB04
B:329-402
Architecture
:
Beta Complex
(381)
Topology
:
Molybdopterin biosynthesis moeA protein; domain 3
(15)
Homologous Superfamily
:
Molybdopterin biosynthesis moea protein, domain 3.
(15)
Escherichia coli. Organism_taxid: 562.
(7)
4a
2nqrB03
B:51-142
[
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]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_MoCF_biosynth_2nqrB01 (B:181-318)
1b: PFAM_MoCF_biosynth_2nqrB02 (B:181-318)
2a: PFAM_MoeA_C_2nqrB03 (B:332-404)
2b: PFAM_MoeA_C_2nqrB04 (B:332-404)
3a: PFAM_MoeA_N_2nqrB05 (B:7-168)
3b: PFAM_MoeA_N_2nqrB06 (B:7-168)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: MoCF_biosynth]
(31)
Family
:
MoCF_biosynth
(31)
Escherichia coli (strain K12)
(12)
1a
MoCF_biosynth-2nqrB01
B:181-318
1b
MoCF_biosynth-2nqrB02
B:181-318
Clan
:
no clan defined [family: MoeA_C]
(15)
Family
:
MoeA_C
(15)
Escherichia coli (strain K12)
(11)
2a
MoeA_C-2nqrB03
B:332-404
2b
MoeA_C-2nqrB04
B:332-404
Clan
:
no clan defined [family: MoeA_N]
(15)
Family
:
MoeA_N
(15)
Escherichia coli (strain K12)
(11)
3a
MoeA_N-2nqrB05
B:7-168
3b
MoeA_N-2nqrB06
B:7-168
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select residue range 5 to 10 in chain 'A'
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