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2NQA
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (109 KB)
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(1)
Title
:
CATALYTIC DOMAIN OF HUMAN CALPAIN 8
Authors
:
T. L. Davis, R. Paramanathan, C. Butler-Cole, P. J. Finerty Jr. , J. Wei M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Pa Structural Genomics Consortium (Sgc)
Date
:
30 Oct 06 (Deposition) - 14 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B,D,E (1x)
Keywords
:
Calpain; Calcium-Dependent Cytoplasmic Cysteine Proteinases; Papain- Like; Ef-Hand; Structural Genomics; Structural Genomics Consortium; Sgc, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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)
Reference
:
T. L. Davis, R. Paramanathan, C. Butler-Cole, P. J. Finerty Jr. , J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon
Structure Of Human Calpain 8
To Be Published
[
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]
Hetero Components
(4, 19)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: AMINO{[(4S)-4-AMINO-5,5-DIHYDROXYP... (AR7a)
2b: AMINO{[(4S)-4-AMINO-5,5-DIHYDROXYP... (AR7b)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
4a: S-HYDROXYCYSTEINE (CSOa)
4b: S-HYDROXYCYSTEINE (CSOb)
4c: S-HYDROXYCYSTEINE (CSOc)
4d: S-HYDROXYCYSTEINE (CSOd)
4e: S-HYDROXYCYSTEINE (CSOe)
4f: S-HYDROXYCYSTEINE (CSOf)
4g: S-HYDROXYCYSTEINE (CSOg)
4h: S-HYDROXYCYSTEINE (CSOh)
4i: S-HYDROXYCYSTEINE (CSOi)
4j: S-HYDROXYCYSTEINE (CSOj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
AR7
2
Mod. Amino Acid
AMINO{[(4S)-4-AMINO-5,5-DIHYDROXYPENTYL]AMINO}METHANIMINIUM
3
CA
5
Ligand/Ion
CALCIUM ION
4
CSO
10
Mod. Amino Acid
S-HYDROXYCYSTEINE
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:292 , ASP A:299 , VAL A:319 , ASP A:321 , GLU A:323
BINDING SITE FOR RESIDUE CA A 901
2
AC2
SOFTWARE
GLU B:292 , ASP B:299 , VAL B:319 , ASP B:321 , GLU B:323
BINDING SITE FOR RESIDUE CA B 902
3
AC3
SOFTWARE
VAL A:89 , GLY A:91 , ASP A:96 , GLU A:175 , HOH A:1060
BINDING SITE FOR RESIDUE CA A 903
4
AC4
SOFTWARE
VAL B:89 , GLY B:91 , ASP B:96 , GLU B:175 , HOH B:996
BINDING SITE FOR RESIDUE CA B 904
5
AC5
SOFTWARE
GLU A:292 , GLU A:320 , ARG B:311 , GLU B:314
BINDING SITE FOR RESIDUE CA A 905
6
AC6
SOFTWARE
GLY A:103 , CYS A:105 , GLY A:197 , ALA A:250 , GLU A:251 , SER A:261 , HIS A:262 , ALA A:263 , TYR B:27 , LEU B:28 , LEU B:188 , ASN B:189 , GLY B:190 , HOH D:98
BINDING SITE FOR CHAIN D OF LEUPEPTIN INHIBITOR
7
AC7
SOFTWARE
TYR A:27 , LEU A:188 , GLY A:190 , GLY B:103 , CYS B:105 , GLY B:197 , SER B:261 , HIS B:262 , HOH B:1032 , HOH E:97
BINDING SITE FOR CHAIN E OF LEUPEPTIN INHIBITOR
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021404 (P68G, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021404
S
68
G
CAN2_HUMAN
Polymorphism
2230083
B
P
68
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CALPAIN_CAT (A:45-342,B:45-343)
2: THIOL_PROTEASE_CYS (A:99-110,B:99-110)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CALPAIN_CAT
PS50203
Cysteine proteinase, calpain-type, catalytic domain profile.
CAN2_HUMAN
45-344
2
A:45-342
B:45-343
2
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CAN2_HUMAN
99-110
2
A:99-110
B:99-110
[
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]
Exons
(9, 18)
Info
All Exons
Exon 1.2a (A:23-79 (gaps) | B:23-79 (gaps))
Exon 1.3b (A:80-103 | B:80-103)
Exon 1.5 (A:103-142 | B:103-142)
Exon 1.6 (A:143-187 | B:143-187)
Exon 1.7b (A:187-243 | B:187-243 (gaps))
Exon 1.8a (A:244-271 | B:244-271)
Exon 1.9 (A:272-300 (gaps) | B:272-300 (gaps...)
Exon 1.10a (A:300-325 | B:300-325)
Exon 1.11 (A:325-342 | B:325-343)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.2a
02: Boundary 1.2a/1.3b
03: Boundary 1.3b/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7b
06: Boundary 1.7b/1.8a
07: Boundary 1.8a/1.9
08: Boundary 1.9/1.10a
09: Boundary 1.10a/1.11
10: Boundary 1.11/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000295006
2a
ENSE00001903247
chr1:
223900034-223900579
546
CAN2_HUMAN
1-79
79
2
A:23-79 (gaps)
B:23-79 (gaps)
57
57
1.3b
ENST00000295006
3b
ENSE00001069725
chr1:
223905464-223905533
70
CAN2_HUMAN
80-103
24
2
A:80-103
B:80-103
24
24
1.5
ENST00000295006
5
ENSE00001069721
chr1:
223931802-223931920
119
CAN2_HUMAN
103-142
40
2
A:103-142
B:103-142
40
40
1.6
ENST00000295006
6
ENSE00001708453
chr1:
223933008-223933141
134
CAN2_HUMAN
143-187
45
2
A:143-187
B:143-187
45
45
1.7b
ENST00000295006
7b
ENSE00001069731
chr1:
223934699-223934867
169
CAN2_HUMAN
187-243
57
2
A:187-243
B:187-243 (gaps)
57
57
1.8a
ENST00000295006
8a
ENSE00001069713
chr1:
223936741-223936824
84
CAN2_HUMAN
244-271
28
2
A:244-271
B:244-271
28
28
1.9
ENST00000295006
9
ENSE00001069714
chr1:
223938592-223938677
86
CAN2_HUMAN
272-300
29
2
A:272-300 (gaps)
B:272-300 (gaps)
29
29
1.10a
ENST00000295006
10a
ENSE00001069732
chr1:
223939699-223939773
75
CAN2_HUMAN
300-325
26
2
A:300-325
B:300-325
26
26
1.11
ENST00000295006
11
ENSE00001069712
chr1:
223940498-223940658
161
CAN2_HUMAN
325-379
55
2
A:325-342
B:325-343
18
19
1.12
ENST00000295006
12
ENSE00001332607
chr1:
223943182-223943351
170
CAN2_HUMAN
379-435
57
0
-
-
1.14a
ENST00000295006
14a
ENSE00001788213
chr1:
223945071-223945082
12
CAN2_HUMAN
436-439
4
0
-
-
1.15c
ENST00000295006
15c
ENSE00001132647
chr1:
223946972-223947183
212
CAN2_HUMAN
440-510
71
0
-
-
1.16a
ENST00000295006
16a
ENSE00001069723
chr1:
223949283-223949319
37
CAN2_HUMAN
510-522
13
0
-
-
1.17
ENST00000295006
17
ENSE00001069716
chr1:
223949888-223949953
66
CAN2_HUMAN
523-544
22
0
-
-
1.18
ENST00000295006
18
ENSE00001069733
chr1:
223951852-223951909
58
CAN2_HUMAN
545-564
20
0
-
-
1.19
ENST00000295006
19
ENSE00001069717
chr1:
223954069-223954133
65
CAN2_HUMAN
564-585
22
0
-
-
1.20a
ENST00000295006
20a
ENSE00001069715
chr1:
223957543-223957611
69
CAN2_HUMAN
586-608
23
0
-
-
1.20e
ENST00000295006
20e
ENSE00001069718
chr1:
223958149-223958227
79
CAN2_HUMAN
609-635
27
0
-
-
1.21b
ENST00000295006
21b
ENSE00001069722
chr1:
223959511-223959627
117
CAN2_HUMAN
635-674
40
0
-
-
1.22a
ENST00000295006
22a
ENSE00001069727
chr1:
223959883-223959941
59
CAN2_HUMAN
674-693
20
0
-
-
1.23b
ENST00000295006
23b
ENSE00001852253
chr1:
223962536-223963720
1185
CAN2_HUMAN
694-700
7
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_C2_2nqaB01 (B:45-343)
1b: PFAM_Peptidase_C2_2nqaB02 (B:45-343)
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Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C2
(15)
Homo sapiens (Human)
(5)
1a
Peptidase_C2-2nqaB01
B:45-343
1b
Peptidase_C2-2nqaB02
B:45-343
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