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2NQ3
Asym. Unit
Info
Asym.Unit (56 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN ITCHY HOMOLOG E3 UBIQUITIN PROTEIN LIGASE
Authors
:
J. R. Walker, G. V. Avvakumov, S. Xue, C. Butler-Cole, P. J. Finerty Jr. , J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon, Structural Genomics Consortium (Sgc)
Date
:
30 Oct 06 (Deposition) - 14 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
C2 Domain, Ligase, Ubl Conjugation Pathway, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Walker, G. V. Avvakumov, S. Xue, C. Butler-Cole, P. J. Finerty Jr. , J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon
The C2 Domain Of Human Itchy Homolog E3 Ubiquitin Protein Ligase
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:19 , ASP A:101
BINDING SITE FOR RESIDUE CL A 156
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: C2 (A:18-99)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C2
PS50004
C2 domain profile.
ITCH_HUMAN
18-99
1
A:18-99
[
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Exons
(4, 4)
Info
All Exons
Exon 1.3b (A:13-24)
Exon 1.4 (A:24-71 (gaps))
Exon 1.5 (A:71-113)
Exon 1.6 (A:113-145)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2a/1.3b
2: Boundary 1.3b/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000262650
1d
ENSE00001927440
chr20:
32951118-32951155
38
ITCH_HUMAN
-
0
0
-
-
1.2a
ENST00000262650
2a
ENSE00001365031
chr20:
32957200-32957276
77
ITCH_HUMAN
-
0
0
-
-
1.3b
ENST00000262650
3b
ENSE00000898488
chr20:
32981597-32981687
91
ITCH_HUMAN
1-24
24
1
A:13-24
12
1.4
ENST00000262650
4
ENSE00001151953
chr20:
32996457-32996598
142
ITCH_HUMAN
24-71
48
1
A:24-71 (gaps)
48
1.5
ENST00000262650
5
ENSE00000661393
chr20:
33000321-33000445
125
ITCH_HUMAN
71-113
43
1
A:71-113
43
1.6
ENST00000262650
6
ENSE00000860103
chr20:
33001548-33001685
138
ITCH_HUMAN
113-159
47
1
A:113-145
33
1.7
ENST00000262650
7
ENSE00001775071
chr20:
33004923-33005045
123
ITCH_HUMAN
159-200
42
0
-
-
1.8
ENST00000262650
8
ENSE00000898489
chr20:
33012286-33012331
46
ITCH_HUMAN
200-215
16
0
-
-
1.9
ENST00000262650
9
ENSE00000898490
chr20:
33026279-33026436
158
ITCH_HUMAN
215-268
54
0
-
-
1.10
ENST00000262650
10
ENSE00000898491
chr20:
33027960-33028149
190
ITCH_HUMAN
268-331
64
0
-
-
1.11
ENST00000262650
11
ENSE00000661399
chr20:
33030013-33030108
96
ITCH_HUMAN
331-363
33
0
-
-
1.12a
ENST00000262650
12a
ENSE00000860104
chr20:
33033092-33033266
175
ITCH_HUMAN
363-421
59
0
-
-
1.13
ENST00000262650
13
ENSE00000860105
chr20:
33037216-33037285
70
ITCH_HUMAN
422-445
24
0
-
-
1.14
ENST00000262650
14
ENSE00000561078
chr20:
33045195-33045279
85
ITCH_HUMAN
445-473
29
0
-
-
1.15
ENST00000262650
15
ENSE00000661407
chr20:
33049898-33050026
129
ITCH_HUMAN
473-516
44
0
-
-
1.16
ENST00000262650
16
ENSE00000898492
chr20:
33057853-33057925
73
ITCH_HUMAN
516-540
25
0
-
-
1.17a
ENST00000262650
17a
ENSE00000860107
chr20:
33059249-33059320
72
ITCH_HUMAN
541-564
24
0
-
-
1.18a
ENST00000262650
18a
ENSE00000561080
chr20:
33065577-33065665
89
ITCH_HUMAN
565-594
30
0
-
-
1.19a
ENST00000262650
19a
ENSE00000561081
chr20:
33067435-33067594
160
ITCH_HUMAN
594-647
54
0
-
-
1.20
ENST00000262650
20
ENSE00000661422
chr20:
33068404-33068537
134
ITCH_HUMAN
648-692
45
0
-
-
1.21c
ENST00000262650
21c
ENSE00000561083
chr20:
33068871-33069011
141
ITCH_HUMAN
692-739
48
0
-
-
1.22
ENST00000262650
22
ENSE00000661428
chr20:
33077071-33077191
121
ITCH_HUMAN
739-779
41
0
-
-
1.23
ENST00000262650
23
ENSE00000561085
chr20:
33077627-33077731
105
ITCH_HUMAN
780-814
35
0
-
-
1.24
ENST00000262650
24
ENSE00000661432
chr20:
33080306-33080402
97
ITCH_HUMAN
815-847
33
0
-
-
1.25
ENST00000262650
25
ENSE00001700827
chr20:
33092136-33092208
73
ITCH_HUMAN
847-871
25
0
-
-
1.26a
ENST00000262650
26a
ENSE00001849071
chr20:
33095500-33096481
982
ITCH_HUMAN
871-903
33
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2nq3a1 (A:13-145)
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Classes
(
)
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)
Folds
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
PLC-like (P variant)
(81)
Protein domain
:
E3 ubiquitin-protein ligase Itchy
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2nq3a1
A:13-145
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_C2_2nq3A01 (A:20-99)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
C2
(71)
Family
:
C2
(34)
Homo sapiens (Human)
(15)
1a
C2-2nq3A01
A:20-99
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Chain A
Asymmetric Unit 1
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