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2NPS
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EARLY ENDOSOMAL SNARE COMPLEX
Authors
:
D. Zwilling, A. Cypionka, W. H. Pohl, D. Fasshauer, P. J. Walla, M. C. Wahl, R. Jahn
Date
:
30 Oct 06 (Deposition) - 26 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Vesicle Fusion, Snare Complex, Early Endosomal Snare Complex, Syntaxin 6, Syntaxin 13, Vti1A, Vamp4, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Zwilling, A. Cypionka, W. H. Pohl, D. Fasshauer, P. J. Walla, M. C. Wahl, R. Jahn
Early Endosomal Snares Form A Structurally Conserved Snare Complex And Fuse Liposomes With Multiple Topologies
Embo J. V. 26 9 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: V_SNARE (A:53-112)
2: SYNAPTOBREVIN (A:71-90)
3: T_SNARE (B:184-240)
4: SYNTAXIN (B:184-223)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
VAMP4_MOUSE
52-112
1
A:53-112
2
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
VAMP4_MOUSE
70-89
1
A:71-90
3
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
STX12_RAT
178-240
1
B:184-240
4
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX12_RAT
184-223
1
B:184-223
[
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Exons
(8, 8)
Info
All Exons
Exon 1.4 (B:181-182)
Exon 1.6 (B:183-192 (gaps))
Exon 1.7 (B:193-217)
Exon 1.8 (B:217-244)
Exon 1.9b (B:245-248)
Exon 2.6b (D:170-199)
Exon 2.8 (D:199-231)
Exon 2.9b (D:231-232)
View:
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All Exon Boundaries
01: Boundary 1.3/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9b
07: Boundary 1.9b/-
08: Boundary 2.5/2.6b
09: Boundary 2.6b/2.8
10: Boundary 2.8/2.9b
11: Boundary 2.9b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSRNOT00000017227
1a
ENSRNOE00000111618
chr5:
152261969-152262164
196
STX12_RAT
1-40
40
0
-
-
1.2
ENSRNOT00000017227
2
ENSRNOE00000112202
chr5:
152273581-152273650
70
STX12_RAT
40-63
24
0
-
-
1.3
ENSRNOT00000017227
3
ENSRNOE00000112341
chr5:
152276990-152277089
100
STX12_RAT
63-96
34
0
-
-
1.4
ENSRNOT00000017227
4
ENSRNOE00000114542
chr5:
152281860-152281997
138
STX12_RAT
97-142
46
1
B:181-182
2
1.5
ENSRNOT00000017227
5
ENSRNOE00000115753
chr5:
152282553-152282596
44
STX12_RAT
143-157
15
0
-
-
1.6
ENSRNOT00000017227
6
ENSRNOE00000116231
chr5:
152283773-152283878
106
STX12_RAT
157-192
36
1
B:183-192 (gaps)
29
1.7
ENSRNOT00000017227
7
ENSRNOE00000113113
chr5:
152285394-152285466
73
STX12_RAT
193-217
25
1
B:193-217
25
1.8
ENSRNOT00000017227
8
ENSRNOE00000113234
chr5:
152286642-152286724
83
STX12_RAT
217-244
28
1
B:217-244
28
1.9b
ENSRNOT00000017227
9b
ENSRNOE00000113366
chr5:
152288708-152290210
1503
STX12_RAT
245-274
30
1
B:245-248
4
2.1
ENST00000258301
1
ENSE00001445082
chr1:
180992047-180991775
273
STX6_HUMAN
1-12
12
0
-
-
2.2
ENST00000258301
2
ENSE00001434793
chr1:
180974599-180974430
170
STX6_HUMAN
12-69
58
0
-
-
2.3
ENST00000258301
3
ENSE00001434832
chr1:
180971836-180971742
95
STX6_HUMAN
69-100
32
0
-
-
2.4
ENST00000258301
4
ENSE00000790201
chr1:
180962561-180962499
63
STX6_HUMAN
101-121
21
0
-
-
2.5
ENST00000258301
5
ENSE00000822709
chr1:
180959245-180959120
126
STX6_HUMAN
122-163
42
0
-
-
2.6b
ENST00000258301
6b
ENSE00000822708
chr1:
180957481-180957375
107
STX6_HUMAN
164-199
36
1
D:170-199
30
2.8
ENST00000258301
8
ENSE00000489802
chr1:
180953907-180953813
95
STX6_HUMAN
199-231
33
1
D:199-231
33
2.9b
ENST00000258301
9b
ENSE00001955708
chr1:
180945782-180941861
3922
STX6_HUMAN
231-255
25
1
D:231-232
2
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2npsa_ (A:)
2a: SCOP_d2npsb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
SNARE fusion complex
(33)
Family
:
automated matches
(2)
Protein domain
:
automated matches
(2)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d2npsa_
A:
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
2a
d2npsb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2npsA00 (A:50-112)
1b: CATH_2npsB00 (B:181-248)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.110, no name defined]
(17)
House mouse (Mus musculus)
(5)
1a
2npsA00
A:50-112
1b
2npsB00
B:181-248
[
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_SNARE_2npsD01 (D:170-230)
2a: PFAM_Synaptobrevin_2npsA01 (A:50-112)
3a: PFAM_V_SNARE_C_2npsC01 (C:123-188)
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)
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)
Organisms
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)
(
)
Clan
:
SNARE-fusion
(10)
Family
:
SNARE
(6)
Homo sapiens (Human)
(3)
1a
SNARE-2npsD01
D:170-230
Family
:
Synaptobrevin
(7)
Mus musculus (Mouse)
(1)
2a
Synaptobrevin-2npsA01
A:50-112
Clan
:
Traffic
(4)
Family
:
V-SNARE_C
(1)
Rattus norvegicus (Rat)
(1)
3a
V-SNARE_C-2npsC01
C:123-188
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