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2NPF
Asym. Unit
Info
Asym.Unit (269 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (133 KB)
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(1)
Title
:
STRUCTURE OF EEF2 IN COMPLEX WITH MORINIAFUNGIN
Authors
:
R. Soe, R. T. Mosley, G. R. Andersen
Date
:
27 Oct 06 (Deposition) - 14 Nov 06 (Release) - 12 Aug 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Protein-Inhibitor Complex, G-Protein, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Soe, R. T. Mosley, M. Justice, J. Nielsen-Kahn, M. Shastry, A. R. Merrill, G. R. Andersen
Sordarin Derivatives Induce A Novel Conformation Of The Yeast Ribosome Translocation Factor Eef2
J. Biol. Chem. V. 282 657 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: (1S,4R,5R,9S,11S)-2-({[(2S,5R,6R,7... (MOUa)
2b: (1S,4R,5R,9S,11S)-2-({[(2S,5R,6R,7... (MOUb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MOU
2
Ligand/Ion
(1S,4R,5R,9S,11S)-2-({[(2S,5R,6R,7R,9S,10R)-2-(7-CARBOXYHEPTYL)-6-HYDROXY-10-METHOXY-9-METHYL-3-OXO-1,4,8-TRIOXASPIRO[4.5]DEC-7-YL]OXY}METHYL)-9-FORMYL-13-ISOPROPYL-5-METHYLTETRACYCLO[7.4.0.02,11.04.8]TRIDEC-12-ENE-1-CARBOXYLIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:487 , VAL A:488 , GLN A:490 , LEU A:519 , TYR A:521 , SER A:523 , GLU A:524 , VAL A:560 , VAL A:561 , ALA A:562 , PRO A:727 , VAL A:774 , SER A:777 , GLY A:779 , PHE A:780 , THR A:781 , MET A:796 , VAL A:797 , PHE A:798 , TRP A:801
BINDING SITE FOR RESIDUE MOU A 901
2
AC2
SOFTWARE
VAL B:488 , GLN B:490 , LEU B:519 , TYR B:521 , SER B:523 , GLU B:524 , VAL B:560 , VAL B:561 , ALA B:562 , PRO B:727 , PHE B:729 , SER B:777 , GLY B:779 , PHE B:780 , THR B:781 , MET B:796 , PHE B:798 , TRP B:801
BINDING SITE FOR RESIDUE MOU B 1901
3
AC3
SOFTWARE
HIS A:27 , ASP A:29 , HIS A:30 , GLY A:31 , LYS A:32 , SER A:33 , THR A:34 , ASN A:158 , LYS A:159 , ASP A:161 , SER A:213 , GLY A:214 , LEU A:215
BINDING SITE FOR RESIDUE GDP A 902
4
AC4
SOFTWARE
HIS B:27 , VAL B:28 , ASP B:29 , HIS B:30 , GLY B:31 , LYS B:32 , SER B:33 , THR B:34 , ASN B:158 , LYS B:159 , ASP B:161 , SER B:213 , GLY B:214 , LEU B:215
BINDING SITE FOR RESIDUE GDP B 1902
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: G_TR_1 (A:67-73,B:67-73)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EF2_YEAST
58-73
2
A:67-73
B:67-73
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Exons
(1, 2)
Info
All Exons
Exon 1.2 (A:3-842 (gaps) | B:3-842 (gaps))
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All Exon Boundaries
1: Boundary -/1.2
2: Boundary 1.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
YOR133W
2
YOR133W.1
XV:575099-577627
2529
EF2_YEAST
1-842
842
2
A:3-842 (gaps)
B:3-842 (gaps)
840
840
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SCOP Domains
(4, 10)
Info
All SCOP Domains
1a: SCOP_d2npfa1 (A:344-481)
1b: SCOP_d2npfb1 (B:344-481)
2a: SCOP_d2npfa4 (A:482-560)
2b: SCOP_d2npfa5 (A:726-842)
2c: SCOP_d2npfb4 (B:482-560)
2d: SCOP_d2npfb5 (B:726-842)
3a: SCOP_d2npfa3 (A:561-725)
3b: SCOP_d2npfb3 (B:561-725)
4a: SCOP_d2npfa2 (A:3-343)
4b: SCOP_d2npfb2 (B:3-343)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor 2 (eEF-2), domain II
(13)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(13)
1a
d2npfa1
A:344-481
1b
d2npfb1
B:344-481
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
EF-G C-terminal domain-like
(33)
Family
:
EF-G/eEF-2 domains III and V
(24)
Protein domain
:
Elongation factor 2 (eEF-2)
(13)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(13)
2a
d2npfa4
A:482-560
2b
d2npfa5
A:726-842
2c
d2npfb4
B:482-560
2d
d2npfb5
B:726-842
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Translational machinery components
(150)
Protein domain
:
Elongation factor 2 (eEF-2), domain IV
(13)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(13)
3a
d2npfa3
A:561-725
3b
d2npfb3
B:561-725
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor 2 (eEF-2), N-terminal (G) domain
(13)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(13)
4a
d2npfa2
A:3-343
4b
d2npfb2
B:3-343
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CATH Domains
(0, 0)
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Pfam Domains
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Show PDB file:
Asym.Unit (269 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
Biol.Unit 2 (133 KB)
Header - Biol.Unit 2
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