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2NOQ
Asym. Unit
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Asym.Unit (200 KB)
Biol.Unit 1 (195 KB)
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(1)
Title
:
STRUCTURE OF RIBOSOME-BOUND CRICKET PARALYSIS VIRUS IRES RNA
Authors
:
M. Schuler, S. R. Connell, A. Lescoute, J. Giesebrecht, M. Dabrowski, B. Schroeer, T. Mielke, P. A. Penczek, E. Westhof, C. M. T. Spahn
Date
:
26 Oct 06 (Deposition) - 21 Nov 06 (Release) - 15 Feb 12 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
7.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Ires Rna, Ribosome, Translation, Internal Initiation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Schuler, S. R. Connell, A. Lescoute, J. Giesebrecht, M. Dabrowski, B. Schroeer, T. Mielke, P. A. Penczek, E. Westhof, C. M. Spahn
Structure Of The Ribosome-Bound Cricket Paralysis Virus Ire Rna.
Nat. Struct. Mol. Biol. V. 13 1092 2006
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_L5 (H:36-52)
2: RIBOSOMAL_S7 (F:90-116)
3: RIBOSOMAL_L1 (G:117-136,G:117-136)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_L5
PS00358
Ribosomal protein L5 signature.
RL11B_YEAST
37-53
1
H:36-52
2
RIBOSOMAL_S7
PS00052
Ribosomal protein S7 signature.
RS5_YEAST
91-117
1
F:90-116
3
RIBOSOMAL_L1
PS01199
Ribosomal protein L1 signature.
RL1A_YEAST
117-136
1
G:117-136
RL1B_YEAST
117-136
1
G:117-136
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (H:6-170)
Exon 2.1 (F:75-224)
Exon 3.1 (G:4-216)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
5: Boundary -/3.1
6: Boundary 3.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGR085C
1
YGR085C.1
VII:648911-648387
525
RL11B_YEAST
1-174
174
1
H:6-170
165
2.1
YJR123W
1
YJR123W.1
X:651891-652568
678
RS5_YEAST
1-225
225
1
F:75-224
150
3.1
YPL220W
1
YPL220W.1
XVI:135789-136442
654
RL1B_YEAST
1-217
217
1
G:4-216
213
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SCOP Domains
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CATH Domains
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Ribosomal_L5_2noqH01 (H:6-59)
2a: PFAM_Ribosomal_L5_C_2noqH02 (H:63-162)
3a: PFAM_Ribosomal_S7_2noqF01 (F:75-224)
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Clans
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Families
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Organisms
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)
(
)
Clan
:
no clan defined [family: Ribosomal_L5]
(45)
Family
:
Ribosomal_L5
(45)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
1a
Ribosomal_L5-2noqH01
H:6-59
Clan
:
no clan defined [family: Ribosomal_L5_C]
(46)
Family
:
Ribosomal_L5_C
(46)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
2a
Ribosomal_L5_C-2noqH02
H:63-162
Clan
:
no clan defined [family: Ribosomal_S7]
(19)
Family
:
Ribosomal_S7
(19)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
3a
Ribosomal_S7-2noqF01
F:75-224
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