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2NMT
Asym. Unit
Info
Asym.Unit (81 KB)
Biol.Unit 1 (75 KB)
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(1)
Title
:
MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE BOUND TO MYRISTOYL-COA AND PEPTIDE ANALOGS
Authors
:
K. Fuetterer, R. S. Bhatnagar, G. Waksman
Date
:
14 Jul 98 (Deposition) - 06 Jan 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase Acyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. S. Bhatnagar, K. Futterer, T. A. Farazi, S. Korolev, C. L. Murray, E. Jackson-Machelski, G. W. Gokel, J. I. Gordon, G. Waksman
Structure Of N-Myristoyltransferase With Bound Myristoylcoa And Peptide Substrate Analogs.
Nat. Struct. Biol. V. 5 1091 1998
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
2a: [CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-... (MIMa)
3a: S-(2-OXO)PENTADECYLCOA (NHMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
12
Ligand/Ion
GLYCEROL
2
MIM
1
Ligand/Ion
[CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL]PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE
3
NHM
1
Ligand/Ion
S-(2-OXO)PENTADECYLCOA
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:38 , LYS A:39 , PHE A:40 , TRP A:41 , ASN A:102 , TYR A:103 , VAL A:104 , ILE A:168 , ASN A:169 , PHE A:170 , LEU A:171 , CYS A:172 , VAL A:173 , ARG A:178 , SER A:179 , ARG A:181 , LEU A:182 , THR A:183 , PRO A:184 , ILE A:187 , THR A:191 , TRP A:200 , HIS A:201 , ALA A:202 , TYR A:204 , THR A:205 , PHE A:425 , MIM A:700 , HOH A:1003
BINDING SITE FOR RESIDUE NHM A 500
02
AC2
SOFTWARE
VAL A:104 , ASP A:106 , ASP A:108 , PHE A:113 , TYR A:115 , ASN A:169 , THR A:205 , GLY A:207 , TYR A:219 , HIS A:221 , PRO A:223 , PHE A:234 , THR A:235 , PHE A:334 , GLY A:416 , ASP A:417 , GLY A:418 , LEU A:455 , NHM A:500 , HOH A:1016
BINDING SITE FOR RESIDUE MIM A 700
03
AC3
SOFTWARE
MET A:246 , GLU A:249 , GOL A:812 , HOH A:1034
BINDING SITE FOR RESIDUE GOL A 801
04
AC4
SOFTWARE
ASP A:132 , ASP A:245 , GOL A:809
BINDING SITE FOR RESIDUE GOL A 802
05
AC5
SOFTWARE
CYS A:197 , GOL A:809
BINDING SITE FOR RESIDUE GOL A 803
06
AC6
SOFTWARE
HIS A:296 , HOH A:1043 , HOH A:1055
BINDING SITE FOR RESIDUE GOL A 804
07
AC7
SOFTWARE
LYS A:263 , PHE A:298 , GLY A:300 , ILE A:311 , SER A:313
BINDING SITE FOR RESIDUE GOL A 805
08
AC8
SOFTWARE
ASP A:270 , LYS A:291 , ASP A:307
BINDING SITE FOR RESIDUE GOL A 806
09
AC9
SOFTWARE
PRO A:58 , HIS A:201
BINDING SITE FOR RESIDUE GOL A 807
10
BC1
SOFTWARE
GLU A:80 , TRP A:81 , CYS A:82 , SER A:83 , GLN A:91 , ARG A:138
BINDING SITE FOR RESIDUE GOL A 808
11
BC2
SOFTWARE
ASP A:132 , THR A:242 , GLU A:244 , ASP A:245 , GOL A:802 , GOL A:803
BINDING SITE FOR RESIDUE GOL A 809
12
BC3
SOFTWARE
GLU A:317 , PRO A:319 , ASP A:320 , GLY A:321
BINDING SITE FOR RESIDUE GOL A 810
13
BC4
SOFTWARE
ASP A:70 , LYS A:196 , GLU A:244
BINDING SITE FOR RESIDUE GOL A 811
14
BC5
SOFTWARE
ASP A:85 , HIS A:241 , GLU A:249 , GOL A:801 , HOH A:1034
BINDING SITE FOR RESIDUE GOL A 812
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: NMT_1 (A:167-175)
2: NMT_2 (A:412-418)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NMT_1
PS00975
Myristoyl-CoA:protein N-myristoyltransferase signature 1.
NMT_YEAST
167-175
1
A:167-175
2
NMT_2
PS00976
Myristoyl-CoA:protein N-myristoyltransferase signature 2.
NMT_YEAST
412-418
1
A:412-418
[
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:34-455)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YLR195C
1
YLR195C.1
XII:543306-541939
1368
NMT_YEAST
1-455
455
1
A:34-455
422
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2nmta1 (A:34-218)
1b: SCOP_d2nmta2 (A:219-455)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Acyl-CoA N-acyltransferases (Nat)
(250)
Superfamily
:
Acyl-CoA N-acyltransferases (Nat)
(250)
Family
:
N-myristoyl transferase, NMT
(7)
Protein domain
:
N-myristoyl transferase, NMT
(7)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d2nmta1
A:34-218
1b
d2nmta2
A:219-455
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2nmtA01 (A:34-206)
1b: CATH_2nmtA02 (A:207-454)
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Architectures
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
[code=3.40.630.30, no name defined]
(126)
Baker's yeast (Saccharomyces cerevisiae)
(10)
1a
2nmtA01
A:34-206
1b
2nmtA02
A:207-454
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_NMT_2nmtA01 (A:56-217)
2a: PFAM_NMT_C_2nmtA02 (A:231-454)
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Clans
(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Acetyltrans
(109)
Family
:
NMT
(9)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(4)
1a
NMT-2nmtA01
A:56-217
Clan
:
no clan defined [family: NMT_C]
(9)
Family
:
NMT_C
(9)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(4)
2a
NMT_C-2nmtA02
A:231-454
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Atom Selection
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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