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2NLU
Asym. Unit
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Asym.Unit (998 KB)
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Models
(16 )
Title
:
DOMAIN-SWAPPED DIMER OF THE PWWP MODULE OF HUMAN HEPATOMA-DERIVED GROWTH FACTOR
Authors
:
S. C. Sue, W. T. Lee, T. H. Huang
Date
:
20 Oct 06 (Deposition) - 04 Sep 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (16 x)
Keywords
:
Hdgf, Hhdgf, Hrp, Hath, Pwwp, Heparin, Domain-Swapping, Hormone/Growth Factor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. C. Sue, W. T. Lee, S. C. Tien, S. C. Lee, J. G. Yu, W. J. Wu, W. G. Wu, T. H. Huang
Pwwp Module Of Human Hepatoma-Derived Growth Factor Forms A Domain-Swapped Dimer With Much Higher Affinity For Heparin
J. Mol. Biol. V. 367 456 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PWWP (A:12-69,B:112-169)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PWWP
PS50812
PWWP domain profile.
HDGF_HUMAN
12-69
2
A:12-69
B:112-169
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Exons
(3, 6)
Info
All Exons
Exon 1.5a (A:1-29 | B:101-129)
Exon 1.7a (A:30-55 | B:130-155)
Exon 1.7c (A:55-100 | B:155-200)
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1: Boundary -/1.5a
2: Boundary 1.5a/1.7a
3: Boundary 1.7a/1.7c
4: Boundary 1.7c/1.9a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5a
ENST00000357325
5a
ENSE00001425593
chr1:
156721536-156721135
402
HDGF_HUMAN
1-29
29
2
A:1-29
B:101-129
29
29
1.7a
ENST00000357325
7a
ENSE00001054761
chr1:
156715165-156715089
77
HDGF_HUMAN
30-55
26
2
A:30-55
B:130-155
26
26
1.7c
ENST00000357325
7c
ENSE00001167827
chr1:
156714938-156714800
139
HDGF_HUMAN
55-101
47
2
A:55-100
B:155-200
46
46
1.9a
ENST00000357325
9a
ENSE00000959262
chr1:
156714140-156713955
186
HDGF_HUMAN
102-163
62
0
-
-
1.10d
ENST00000357325
10d
ENSE00001267769
chr1:
156713670-156713444
227
HDGF_HUMAN
164-239
76
0
-
-
1.10j
ENST00000357325
10j
ENSE00001922574
chr1:
156713247-156711899
1349
HDGF_HUMAN
239-240
2
0
-
-
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SCOP Domains
(1, 2)
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1a: SCOP_d2nlua_ (A:)
1b: SCOP_d2nlub_ (B:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
PWWP domain
(14)
Protein domain
:
automated matches
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2nlua_
A:
1b
d2nlub_
B:
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CATH Domains
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Pfam Domains
(1, 2)
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all PFAM domains
1a: PFAM_PWWP_2nluB01 (B:109-181)
1b: PFAM_PWWP_2nluB02 (B:109-181)
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Clan
:
Tudor
(88)
Family
:
PWWP
(17)
Homo sapiens (Human)
(15)
1a
PWWP-2nluB01
B:109-181
1b
PWWP-2nluB02
B:109-181
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