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2NL9
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (130 KB)
Biol.Unit 3 (122 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MCL-1:BIM BH3 COMPLEX
Authors
:
P. E. Czabotar, P. M. Colman
Date
:
19 Oct 06 (Deposition) - 27 Mar 07 (Release) - 14 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (4x)
Biol. Unit 3: A,B (4x)
Keywords
:
Apoptosis, Bcl-2, Mcl-1, Bim
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. E. Czabotar, E. F. Lee, M. F. Van Delft, C. L. Day, B. J. Smith, D. C. Huang, W. D. Fairlie, M. G. Hinds, P. M. Colman
Structural Insights Into The Degradation Of Mcl-1 Induced B Bh3 Domains.
Proc. Natl. Acad. Sci. Usa V. 104 6217 2007
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
3
ZN
7
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:240 , ASP A:241 , GLU A:292 , HOH A:2099
BINDING SITE FOR RESIDUE ZN A 1001
2
AC2
SOFTWARE
HIS A:224 , ASP A:313 , GLU A:317 , GLU B:68
BINDING SITE FOR RESIDUE ZN A 1002
3
AC3
SOFTWARE
HIS A:252 , ASP A:304 , ZN A:1004 , HOH A:2106 , HOH B:1035
BINDING SITE FOR RESIDUE ZN A 1003
4
AC4
SOFTWARE
HIS A:252 , ASP A:304 , ZN A:1003 , HOH A:2106 , HOH A:2107
BINDING SITE FOR RESIDUE ZN A 1004
5
AC5
SOFTWARE
CYS A:286 , HOH A:2102 , HOH A:2103 , HOH A:2104
BINDING SITE FOR RESIDUE ZN A 1005
6
AC6
SOFTWARE
CYS A:286 , HOH A:2115
BINDING SITE FOR RESIDUE ZN A 1006
7
AC7
SOFTWARE
HIS A:320 , GLU A:322 , GLU B:61 , HOH B:1034
BINDING SITE FOR RESIDUE ZN B 1007
8
AC8
SOFTWARE
ARG A:300
BINDING SITE FOR RESIDUE CL A 2001
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024021 (D173D, chain A, )
2: VAR_024022 (A227V, chain A, )
3: VAR_054157 (M231L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024021
E
173
D
MCL1_HUMAN
Polymorphism
2737820
A
D
173
D
2
UniProt
VAR_024022
A
227
V
MCL1_HUMAN
Polymorphism
11580946
A
A
227
V
3
UniProt
VAR_054157
M
231
L
MCL1_HUMAN
Polymorphism
---
A
M
231
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: BH3 (A:209-223,A:209-223)
2: BCL2_FAMILY (A:213-314,A:213-314)
3: BH1 (A:253-272,A:253-272)
4: BH2 (A:305-316,A:305-316)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
MCL1_MOUSE
190-204
1
A:209-223
MCL1_HUMAN
209-223
1
A:209-223
2
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
MCL1_MOUSE
194-295
1
A:213-314
MCL1_HUMAN
213-314
1
A:213-314
3
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
MCL1_MOUSE
234-253
1
A:253-272
MCL1_HUMAN
253-272
1
A:253-272
4
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
MCL1_MOUSE
286-297
1
A:305-316
MCL1_HUMAN
305-316
1
A:305-316
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Exons
(1, 1)
Info
All Exons
Exon 1.10b (B:53-75)
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All Exon Boundaries
1: Boundary 1.4d/1.10b
2: Boundary 1.10b/1.14f
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000393256
2b
ENSE00001830376
chr2:
111878506-111878765
260
B2L11_HUMAN
-
0
0
-
-
1.4d
ENST00000393256
4d
ENSE00001008808
chr2:
111881310-111881716
407
B2L11_HUMAN
1-132
132
0
-
-
1.10b
ENST00000393256
10b
ENSE00001756661
chr2:
111907621-111907724
104
B2L11_HUMAN
132-166
35
1
B:53-75
23
1.14f
ENST00000393256
14f
ENSE00001924953
chr2:
111921710-111924587
2878
B2L11_HUMAN
167-198
32
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2nl9a_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
Bcl-2 inhibitors of programmed cell death
(102)
Protein domain
:
EAT/MCL-1 (Myeloid cell leukemia sequence 1)
(8)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
1a
d2nl9a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Bcl_2_2nl9A01 (A:213-312)
2a: PFAM_Bclx_interact_2nl9B01 (B:53-75)
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Clans
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)
(
)
Clan
:
no clan defined [family: Bcl-2]
(60)
Family
:
Bcl-2
(60)
Homo sapiens (Human)
(44)
1a
Bcl-2-2nl9A01
A:213-312
Clan
:
no clan defined [family: Bclx_interact]
(9)
Family
:
Bclx_interact
(9)
Homo sapiens (Human)
(8)
2a
Bclx_interact-2nl9B01
B:53-75
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Asym.Unit (41 KB)
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