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2NG1
Asym. Unit
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Asym.Unit (53 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
N AND GTPASE DOMAINS OF THE SIGNAL SEQUENCE RECOGNITION PROTEIN FFH FROM THERMUS AQUATICUS
Authors
:
D. M. Freymann, R. M. Stroud, P. Walter
Date
:
11 Sep 98 (Deposition) - 30 Jul 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.02
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ffh, Srp, Gtpase, Signal Recognition Particle, Gdp
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. M. Freymann, R. J. Keenan, R. M. Stroud, P. Walter
Functional Changes In The Structure Of The Srp Gtpase On Binding Gdp And Mg2+Gdp.
Nat. Struct. Biol. V. 6 793 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 1,4-DIETHYLENE DIOXIDE (DIOa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DIO
1
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:3 , GLY A:108 , SER A:109 , GLY A:110 , LYS A:111 , THR A:112 , THR A:113 , GLN A:144 , LYS A:246 , ASP A:248 , GLY A:271 , VAL A:272 , SER A:273 , GLU A:274 , HOH A:997 , HOH A:998 , HOH A:1007
BINDING SITE FOR RESIDUE GDP A 900
2
AC2
SOFTWARE
VAL A:272 , GLU A:280 , PRO A:281 , TYR A:283 , ARG A:290
BINDING SITE FOR RESIDUE DIO A 800
3
AC3
SOFTWARE
GLY A:105 , LEU A:106 , ALA A:189 , GLY A:190 , ARG A:191 , ASP A:195 , PHE A:233 , HOH A:1008
BINDING SITE FOR RESIDUE EDO A 971
4
AC4
SOFTWARE
VAL A:152
BINDING SITE FOR RESIDUE EDO A 973
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SRP54 (A:266-279)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SRP54
PS00300
SRP54-type proteins GTP-binding domain signature.
SRP54_THEAQ
266-279
1
A:266-279
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2ng1a1 (A:2-88)
2a: SCOP_d2ng1a2 (A:89-294)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Domain of the SRP/SRP receptor G-proteins
(34)
Family
:
Domain of the SRP/SRP receptor G-proteins
(29)
Protein domain
:
Signal sequence recognition protein Ffh
(21)
Thermus aquaticus [TaxId: 271]
(17)
1a
d2ng1a1
A:2-88
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
GTPase domain of the signal sequence recognition protein Ffh
(21)
Thermus aquaticus [TaxId: 271]
(17)
2a
d2ng1a2
A:89-294
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2ng1A02 (A:91-281)
2a: CATH_2ng1A01 (A:2-90)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermus aquaticus. Organism_taxid: 271.
(3)
1a
2ng1A02
A:91-281
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.140, no name defined]
(15)
Thermus aquaticus. Organism_taxid: 271.
(3)
2a
2ng1A01
A:2-90
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_SRP54_2ng1A01 (A:98-293)
2a: PFAM_SRP54_N_2ng1A02 (A:5-82)
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Clans
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)
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)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
SRP54
(20)
Thermus aquaticus
(12)
1a
SRP54-2ng1A01
A:98-293
Clan
:
no clan defined [family: SRP54_N]
(20)
Family
:
SRP54_N
(20)
Thermus aquaticus
(12)
2a
SRP54_N-2ng1A02
A:5-82
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Asymmetric Unit 1
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