PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2MSC
Asym. Unit
Info
Asym.Unit (1.5 MB)
Biol.Unit 1 (156 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(10 )
Title
:
NMR DATA-DRIVEN MODEL OF GTPASE KRAS-GDP TETHERED TO A LIPID-BILAYER NANODISC
Authors
:
M. Mazhab-Jafari, P. Stathopoulos, C. Marshall, M. Ikura
Date
:
29 Jul 14 (Deposition) - 03 Jun 15 (Release) - 10 Jun 15 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,C (10 x)
Biol. Unit 1: A,B,C (1x)
Keywords
:
K-Ras, Nanodisc, Pre, Docking, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. T. Mazhab-Jafari, C. B. Marshall, M. J. Smith, G. M. Gasmi-Seabrook P. B. Stathopulos, F. Inagaki, L. E. Kay, B. G. Neel, M. Ikura
Oncogenic And Rasopathy-Associated K-Ras Mutations Relieve Membrane-Dependent Occlusion Of The Effector-Binding Site.
Proc. Natl. Acad. Sci. Usa V. 112 6625 2015
[
close entry info
]
Hetero Components
(4, 82)
Info
All Hetero Components
1a: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fa)
1b: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fb)
1c: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fc)
1d: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fd)
1e: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fe)
1f: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Ff)
1g: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fg)
1h: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fh)
1i: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fi)
1j: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fj)
1k: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fk)
1l: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fl)
1m: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fm)
1n: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fn)
1o: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fo)
1p: O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC... (17Fp)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3a: MAGNESIUM ION (MGa)
4a: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWa)
4aa: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaa)
4ab: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWab)
4ac: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWac)
4ad: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWad)
4ae: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWae)
4af: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaf)
4ag: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWag)
4ah: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWah)
4ai: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWai)
4aj: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaj)
4ak: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWak)
4al: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWal)
4am: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWam)
4an: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWan)
4ao: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWao)
4ap: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWap)
4aq: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaq)
4ar: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWar)
4as: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWas)
4at: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWat)
4au: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWau)
4av: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWav)
4aw: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaw)
4ax: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWax)
4ay: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWay)
4az: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaz)
4b: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWb)
4ba: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWba)
4bb: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbb)
4bc: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbc)
4bd: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbd)
4be: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbe)
4bf: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbf)
4bg: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbg)
4bh: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbh)
4bi: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbi)
4bj: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbj)
4bk: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbk)
4bl: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWbl)
4c: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWc)
4d: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWd)
4e: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWe)
4f: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWf)
4g: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWg)
4h: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWh)
4i: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWi)
4j: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWj)
4k: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWk)
4l: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWl)
4m: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWm)
4n: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWn)
4o: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWo)
4p: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWp)
4q: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWq)
4r: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWr)
4s: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWs)
4t: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWt)
4u: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWu)
4v: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWv)
4w: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWw)
4x: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWx)
4y: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWy)
4z: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
17F
16
Ligand/Ion
O-[(S)-({(2R)-2,3-BIS[(9Z)-OCTADEC-9-ENOYLOXY]PROPYL}OXY)(HYDROXY)PHOSPHORYL]-L-SERINE
2
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
PCW
64
Ligand/Ion
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
[
close Hetero Component info
]
Sites
(82, 82)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
78: IC6 (SOFTWARE)
79: IC7 (SOFTWARE)
80: IC8 (SOFTWARE)
81: IC9 (SOFTWARE)
82: JC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PCW A:17 , 17F A:35 , 17F A:38 , 17F A:40
BINDING SITE FOR RESIDUE PCW A 1
02
AC2
SOFTWARE
PCW A:17 , HIS A:356
BINDING SITE FOR RESIDUE PCW A 2
03
AC3
SOFTWARE
PCW A:18 , PCW A:19 , PCW A:23
BINDING SITE FOR RESIDUE PCW A 3
04
AC4
SOFTWARE
PCW A:7 , PCW A:16 , 17F A:33 , ARG B:123 , THR B:127 , GLU B:143
BINDING SITE FOR RESIDUE PCW A 4
05
AC5
SOFTWARE
PCW A:17 , 17F A:38
BINDING SITE FOR RESIDUE PCW A 5
06
AC6
SOFTWARE
PCW A:11 , PCW A:16 , PCW A:24 , PCW A:28 , 17F A:39 , ASP B:154
BINDING SITE FOR RESIDUE PCW A 6
07
AC7
SOFTWARE
PCW A:4 , PCW A:16 , 17F A:33 , 17F A:35 , THR B:127
BINDING SITE FOR RESIDUE PCW A 7
08
AC8
SOFTWARE
PCW A:22 , PCW A:27 , LYS B:182 , THR B:183
BINDING SITE FOR RESIDUE PCW A 8
09
AC9
SOFTWARE
PCW A:11 , PCW A:14 , PCW A:28 , PCW A:30 , 17F A:34 , ASP B:47 , GLY B:48
BINDING SITE FOR RESIDUE PCW A 9
10
BC1
SOFTWARE
PCW A:12 , PCW A:21 , PCW A:22 , 17F A:36 , LYS B:179 , LYS B:182 , LYS B:184
BINDING SITE FOR RESIDUE PCW A 10
11
BC2
SOFTWARE
PCW A:6 , PCW A:9 , PCW A:24 , PCW A:26 , PCW A:28 , VAL B:45 , ASP B:47 , ARG B:161
BINDING SITE FOR RESIDUE PCW A 11
12
BC3
SOFTWARE
PCW A:10 , PCW A:22 , PCW A:30 , 17F A:36 , LYS B:172 , ASP B:173 , GLY B:174 , LYS B:184 , CYS B:185
BINDING SITE FOR RESIDUE PCW A 12
13
BC4
SOFTWARE
PCW A:18 , PCW A:30 , 17F A:34 , 17F A:37
BINDING SITE FOR RESIDUE PCW A 13
14
BC5
SOFTWARE
PCW A:9 , 17F A:34
BINDING SITE FOR RESIDUE PCW A 14
15
BC6
SOFTWARE
PCW A:16 , 17F A:39 , PHE A:214 , ARG A:218 , THR B:148 , ARG B:149
BINDING SITE FOR RESIDUE PCW A 15
16
BC7
SOFTWARE
PCW A:4 , PCW A:6 , PCW A:7 , PCW A:15 , PCW A:24 , 17F A:39 , GLN B:150
BINDING SITE FOR RESIDUE PCW A 16
17
BC8
SOFTWARE
PCW A:1 , PCW A:2 , PCW A:5 , PCW A:21
BINDING SITE FOR RESIDUE PCW A 17
18
BC9
SOFTWARE
PCW A:3 , PCW A:13 , PCW A:23
BINDING SITE FOR RESIDUE PCW A 18
19
CC1
SOFTWARE
PCW A:3 , PCW A:29
BINDING SITE FOR RESIDUE PCW A 19
20
CC2
SOFTWARE
PCW A:24 , PCW A:31 , 17F A:39
BINDING SITE FOR RESIDUE PCW A 20
21
CC3
SOFTWARE
PCW A:10 , PCW A:17 , 17F A:36 , LYS B:177 , LYS B:184
BINDING SITE FOR RESIDUE PCW A 21
22
CC4
SOFTWARE
PCW A:8 , PCW A:10 , PCW A:12 , PCW A:27 , THR B:183 , CYS B:185
BINDING SITE FOR RESIDUE PCW A 22
23
CC5
SOFTWARE
PCW A:3 , PCW A:18
BINDING SITE FOR RESIDUE PCW A 23
24
CC6
SOFTWARE
PCW A:6 , PCW A:11 , PCW A:16 , PCW A:20 , 17F A:39 , ASP B:153 , TYR B:157
BINDING SITE FOR RESIDUE PCW A 24
25
CC7
SOFTWARE
PCW A:29 , PCW A:31
BINDING SITE FOR RESIDUE PCW A 25
26
CC8
SOFTWARE
PCW A:11 , PCW A:28 , ASP B:47 , LYS B:165
BINDING SITE FOR RESIDUE PCW A 26
27
CC9
SOFTWARE
PCW A:8 , PCW A:22 , 17F A:37 , TYR C:470
BINDING SITE FOR RESIDUE PCW A 27
28
DC1
SOFTWARE
PCW A:6 , PCW A:9 , PCW A:11 , PCW A:26 , ASP B:154 , ARG B:161
BINDING SITE FOR RESIDUE PCW A 28
29
DC2
SOFTWARE
PCW A:19 , PCW A:25 , PCW A:31 , ASP A:246
BINDING SITE FOR RESIDUE PCW A 29
30
DC3
SOFTWARE
PCW A:9 , PCW A:12 , PCW A:13 , 17F A:34 , 17F A:40 , GLU B:168 , SER B:171
BINDING SITE FOR RESIDUE PCW A 30
31
DC4
SOFTWARE
PCW A:20 , PCW A:25 , PCW A:29
BINDING SITE FOR RESIDUE PCW A 31
32
DC5
SOFTWARE
17F A:33 , 17F A:35
BINDING SITE FOR RESIDUE PCW A 32
33
DC6
SOFTWARE
PCW A:4 , PCW A:7 , PCW A:32 , 17F A:35 , THR B:127 , LYS B:128
BINDING SITE FOR RESIDUE 17F A 33
34
DC7
SOFTWARE
PCW A:9 , PCW A:13 , PCW A:14 , PCW A:30 , 17F A:40
BINDING SITE FOR RESIDUE 17F A 34
35
DC8
SOFTWARE
PCW A:1 , PCW A:7 , PCW A:32 , 17F A:33 , GLN B:131 , ARG B:135 , PHE B:141
BINDING SITE FOR RESIDUE 17F A 35
36
DC9
SOFTWARE
PCW A:10 , PCW A:12 , PCW A:21 , 17F A:40 , LYS B:175 , LYS B:177 , LYS B:184
BINDING SITE FOR RESIDUE 17F A 36
37
EC1
SOFTWARE
PCW A:13 , PCW A:27 , PCW A:49
BINDING SITE FOR RESIDUE 17F A 37
38
EC2
SOFTWARE
PCW A:1 , PCW A:5 , ARG B:135
BINDING SITE FOR RESIDUE 17F A 38
39
EC3
SOFTWARE
PCW A:6 , PCW A:15 , PCW A:16 , PCW A:20 , PCW A:24 , ARG B:149
BINDING SITE FOR RESIDUE 17F A 39
40
EC4
SOFTWARE
PCW A:1 , PCW A:30 , 17F A:34 , 17F A:36 , LYS B:169 , LYS B:172 , LYS B:175
BINDING SITE FOR RESIDUE 17F A 40
41
EC5
SOFTWARE
PCW A:52 , PCW A:59 , PCW A:61 , 17F A:77
BINDING SITE FOR RESIDUE PCW A 41
42
EC6
SOFTWARE
PCW A:52 , PCW A:63 , PCW A:69 , 17F A:75
BINDING SITE FOR RESIDUE PCW A 42
43
EC7
SOFTWARE
PCW A:68 , PCW A:69 , 17F A:75
BINDING SITE FOR RESIDUE PCW A 43
44
EC8
SOFTWARE
PCW A:53 , PCW A:64 , PCW A:69 , 17F A:77
BINDING SITE FOR RESIDUE PCW A 44
45
EC9
SOFTWARE
17F A:74
BINDING SITE FOR RESIDUE PCW A 45
46
FC1
SOFTWARE
PCW A:71
BINDING SITE FOR RESIDUE PCW A 46
47
FC2
SOFTWARE
PCW A:49 , PCW A:71 , 17F A:76
BINDING SITE FOR RESIDUE PCW A 47
48
FC3
SOFTWARE
PCW A:54 , PCW A:58 , PCW A:60 , PCW A:61
BINDING SITE FOR RESIDUE PCW A 48
49
FC4
SOFTWARE
17F A:37 , PCW A:47 , PCW A:57 , PCW A:65 , 17F A:80
BINDING SITE FOR RESIDUE PCW A 49
50
FC5
SOFTWARE
17F A:78
BINDING SITE FOR RESIDUE PCW A 50
51
FC6
SOFTWARE
PCW A:56 , PCW A:71
BINDING SITE FOR RESIDUE PCW A 51
52
FC7
SOFTWARE
PCW A:41 , PCW A:42 , PCW A:60
BINDING SITE FOR RESIDUE PCW A 52
53
FC8
SOFTWARE
PCW A:44 , PCW A:64 , PCW A:68 , PCW A:70
BINDING SITE FOR RESIDUE PCW A 53
54
FC9
SOFTWARE
PCW A:48 , PCW A:62 , PCW A:72
BINDING SITE FOR RESIDUE PCW A 54
55
GC1
SOFTWARE
PCW A:64
BINDING SITE FOR RESIDUE PCW A 55
56
GC2
SOFTWARE
PCW A:51 , PCW A:70
BINDING SITE FOR RESIDUE PCW A 56
57
GC3
SOFTWARE
PCW A:49 , 17F A:76 , 17F A:80
BINDING SITE FOR RESIDUE PCW A 57
58
GC4
SOFTWARE
PCW A:48 , PCW A:61
BINDING SITE FOR RESIDUE PCW A 58
59
GC5
SOFTWARE
PCW A:41 , PCW A:61 , 17F A:77
BINDING SITE FOR RESIDUE PCW A 59
60
GC6
SOFTWARE
PCW A:48 , PCW A:52 , PCW A:61 , PCW A:62 , PCW A:63
BINDING SITE FOR RESIDUE PCW A 60
61
GC7
SOFTWARE
PCW A:41 , PCW A:48 , PCW A:58 , PCW A:59 , PCW A:60
BINDING SITE FOR RESIDUE PCW A 61
62
GC8
SOFTWARE
PCW A:54 , PCW A:60 , PCW A:67 , PCW A:72 , 17F A:78
BINDING SITE FOR RESIDUE PCW A 62
63
GC9
SOFTWARE
PCW A:42 , PCW A:60 , PCW A:67 , 17F A:75
BINDING SITE FOR RESIDUE PCW A 63
64
HC1
SOFTWARE
PCW A:44 , PCW A:53 , PCW A:55
BINDING SITE FOR RESIDUE PCW A 64
65
HC2
SOFTWARE
PCW A:49 , 17F A:80
BINDING SITE FOR RESIDUE PCW A 65
66
HC3
SOFTWARE
PCW A:67 , 17F A:78 , 17F A:79
BINDING SITE FOR RESIDUE PCW A 66
67
HC4
SOFTWARE
PCW A:62 , PCW A:63 , PCW A:66 , 17F A:78
BINDING SITE FOR RESIDUE PCW A 67
68
HC5
SOFTWARE
PCW A:43 , PCW A:53 , PCW A:69 , PCW A:70
BINDING SITE FOR RESIDUE PCW A 68
69
HC6
SOFTWARE
PCW A:42 , PCW A:43 , PCW A:44 , PCW A:68 , 17F A:75
BINDING SITE FOR RESIDUE PCW A 69
70
HC7
SOFTWARE
PCW A:53 , PCW A:56 , PCW A:68
BINDING SITE FOR RESIDUE PCW A 70
71
HC8
SOFTWARE
PCW A:46 , PCW A:47 , PCW A:51
BINDING SITE FOR RESIDUE PCW A 71
72
HC9
SOFTWARE
PCW A:54 , PCW A:62 , 17F A:78
BINDING SITE FOR RESIDUE PCW A 72
73
IC1
SOFTWARE
17F A:76
BINDING SITE FOR RESIDUE 17F A 73
74
IC2
SOFTWARE
PCW A:45 , 17F A:79
BINDING SITE FOR RESIDUE 17F A 74
75
IC3
SOFTWARE
PCW A:42 , PCW A:43 , PCW A:63 , PCW A:69
BINDING SITE FOR RESIDUE 17F A 75
76
IC4
SOFTWARE
PCW A:47 , PCW A:57 , 17F A:73
BINDING SITE FOR RESIDUE 17F A 76
77
IC5
SOFTWARE
PCW A:41 , PCW A:44 , PCW A:59
BINDING SITE FOR RESIDUE 17F A 77
78
IC6
SOFTWARE
PCW A:50 , PCW A:62 , PCW A:66 , PCW A:67 , PCW A:72
BINDING SITE FOR RESIDUE 17F A 78
79
IC7
SOFTWARE
PCW A:66 , 17F A:74
BINDING SITE FOR RESIDUE 17F A 79
80
IC8
SOFTWARE
PCW A:49 , PCW A:57 , PCW A:65
BINDING SITE FOR RESIDUE 17F A 80
81
IC9
SOFTWARE
ALA B:11 , GLY B:13 , VAL B:14 , GLY B:15 , LYS B:16 , SER B:17 , ALA B:18 , PHE B:28 , VAL B:29 , ASP B:30 , PRO B:34 , ASN B:116 , LYS B:117 , ASP B:119 , SER B:145 , ALA B:146 , LYS B:147
BINDING SITE FOR RESIDUE GDP B 201
82
JC1
SOFTWARE
ILE B:36 , GLU B:37 , ASP B:57 , THR B:58
BINDING SITE FOR RESIDUE MG B 202
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.5 MB)
Header - Asym.Unit
Biol.Unit 1 (156 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2MSC
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
