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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
2MLF
Asym. Unit
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Asym.Unit (388 KB)
Biol.Unit 1 (20 KB)
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Models
(20 )
Title
:
NMR STRUCTURE OF THE DILATED CARDIOMYOPATHY MUTATION G159D IN TROPONIN C BOUND TO THE ANCHORING REGION OF TROPONIN I
Authors
:
O. K. Baryshnikova, I. M. Robertson, P. Mercier, B. D. Sykes
Date
:
26 Feb 14 (Deposition) - 12 Mar 14 (Release) - 09 Dec 15 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : C (20 x)
Biol. Unit 1: C (1x)
Keywords
:
Troponin C, Metal Binding Protein, Dilated Cardiomyopathy, G159D, Ef- Hand
(Keyword Search:
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Reference
:
O. K. Baryshnikova, I. M. Robertson, P. Mercier, B. D. Sykes
The Dilated Cardiomyopathy G159D Mutation In Cardiac Troponin C Weakens The Anchoring Interaction With Troponin I.
Biochemistry V. 47 10950 2008
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP C:141 , ASP C:145 , ARG C:147 , GLU C:152
BINDING SITE FOR RESIDUE CA C 201
2
AC2
SOFTWARE
ASP C:105 , ASP C:109 , TYR C:111 , GLU C:116
BINDING SITE FOR RESIDUE CA C 202
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_063072 (E134D, chain C, )
2: VAR_063073 (D145E, chain C, )
3: VAR_043988 (D159R, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063072
E
134
D
TNNC1_HUMAN
Disease (CMH13)
---
C
E
134
D
2
UniProt
VAR_063073
D
145
E
TNNC1_HUMAN
Disease (CMH13)
---
C
D
145
E
3
UniProt
VAR_043988
G
159
R
TNNC1_HUMAN
Disease (CMD1Z)
---
C
D
159
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (-|-|C:92-127|C:128-161)
2: EF_HAND_1 (-|C:105-117|C:141-153)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
TNNC1_HUMAN
33-51
52-87
92-127
128-161
2
-
-
C:92-127
C:128-161
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
TNNC1_HUMAN
65-77
105-117
141-153
2
-
C:105-117
C:141-153
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Exons
(3, 3)
Info
All Exons
Exon 1.4b (C:90-106)
Exon 1.5c (C:106-152)
Exon 1.6 (C:152-161)
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All Exon Boundaries
1: Boundary 1.3/1.4b
2: Boundary 1.4b/1.5c
3: Boundary 1.5c/1.6
4: Boundary 1.6/-
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000232975
1
ENSE00001063786
chr3:
52488086-52488008
79
TNNC1_HUMAN
1-8
8
0
-
-
1.2b
ENST00000232975
2b
ENSE00000770833
chr3:
52486529-52486499
31
TNNC1_HUMAN
9-19
11
0
-
-
1.3
ENST00000232975
3
ENSE00000770832
chr3:
52486268-52486122
147
TNNC1_HUMAN
19-68
50
0
-
-
1.4b
ENST00000232975
4b
ENSE00000770831
chr3:
52485874-52485760
115
TNNC1_HUMAN
68-106
39
1
C:90-106
17
1.5c
ENST00000232975
5c
ENSE00000770830
chr3:
52485543-52485407
137
TNNC1_HUMAN
106-152
47
1
C:106-152
47
1.6
ENST00000232975
6
ENSE00001063787
chr3:
52485322-52485118
205
TNNC1_HUMAN
152-161
10
1
C:152-161
10
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2mlfc_ (C:)
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
automated matches
(54)
Human (Homo sapiens) [TaxId: 9606]
(21)
1a
d2mlfc_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Atom Selection
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Protein
Nucleic
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Hetero
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All Atoms
Protein & NOT Variant
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Chain C
Asymmetric Unit 1
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Asym.Unit (388 KB)
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