PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2MH0
Asym. Unit
Info
Asym.Unit (675 KB)
Biol.Unit 1 (35 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION NMR STRUCTURE OF THE P300 TAZ2:ETAD1 COMPLEX
Authors
:
D. N. Langelaan, S. P. Smith, S. Chitayat
Date
:
12 Nov 13 (Deposition) - 12 Nov 14 (Release) - 12 Nov 14 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Transcription-Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Langelaan, S. Smith, S. Chitayat
Solution Nmr Structure Of The P300 Taz2:Etad1 Complex
To Be Published
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_036396 (A8V, chain A, )
2: VAR_TFE2_HUMAN_CCDS12074_1_01 (A8V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036396
A
8
V
TFE2_HUMAN
Unclassified
---
A
A
8
V
2
CancerSNP
VAR_TFE2_HUMAN_CCDS12074_1_01
*
A
8
V
TFE2_HUMAN
Disease (Colorectal cancer)
---
A
A
8
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZF_TAZ (-|B:1728-1809)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_TAZ
PS50134
Zinc finger TAZ-type profile.
EP300_HUMAN
331-417
1728-1809
1
-
B:1728-1809
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:1-24)
Exon 1.3 (A:25-37)
Exon 2.31 (B:1721-1812)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 2.30/2.31
5: Boundary 2.31/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000262965
1
ENSE00001724128
chr19:
1652326-1652299
28
TFE2_HUMAN
-
0
0
-
-
1.2
ENST00000262965
2
ENSE00001376842
chr19:
1650286-1650176
111
TFE2_HUMAN
1-24
24
1
A:1-24
24
1.3
ENST00000262965
3
ENSE00000651461
chr19:
1646426-1646354
73
TFE2_HUMAN
25-49
25
1
A:25-37
13
1.4
ENST00000262965
4
ENSE00000336287
chr19:
1632404-1632331
74
TFE2_HUMAN
49-73
25
0
-
-
1.5
ENST00000262965
5
ENSE00000651464
chr19:
1632115-1632037
79
TFE2_HUMAN
74-100
27
0
-
-
1.6
ENST00000262965
6
ENSE00001151945
chr19:
1627425-1627358
68
TFE2_HUMAN
100-122
23
0
-
-
1.7
ENST00000262965
7
ENSE00000651466
chr19:
1625707-1625575
133
TFE2_HUMAN
123-167
45
0
-
-
1.8
ENST00000262965
8
ENSE00001151938
chr19:
1623999-1623950
50
TFE2_HUMAN
167-183
17
0
-
-
1.9
ENST00000262965
9
ENSE00000651469
chr19:
1622414-1622312
103
TFE2_HUMAN
184-218
35
0
-
-
1.10
ENST00000262965
10
ENSE00001151931
chr19:
1622222-1622053
170
TFE2_HUMAN
218-274
57
0
-
-
1.11
ENST00000262965
11
ENSE00000651472
chr19:
1621969-1621837
133
TFE2_HUMAN
275-319
45
0
-
-
1.12
ENST00000262965
12
ENSE00001151926
chr19:
1621190-1621132
59
TFE2_HUMAN
319-338
20
0
-
-
1.13
ENST00000262965
13
ENSE00000651474
chr19:
1621045-1620967
79
TFE2_HUMAN
339-365
27
0
-
-
1.14
ENST00000262965
14
ENSE00001151915
chr19:
1619852-1619779
74
TFE2_HUMAN
365-389
25
0
-
-
1.15
ENST00000262965
15
ENSE00000873563
chr19:
1619473-1619315
159
TFE2_HUMAN
390-442
53
0
-
-
1.16
ENST00000262965
16
ENSE00000873564
chr19:
1619233-1619110
124
TFE2_HUMAN
443-484
42
0
-
-
1.17a
ENST00000262965
17a
ENSE00000651478
chr19:
1615820-1615685
136
TFE2_HUMAN
484-529
46
0
-
-
1.17c
ENST00000262965
17c
ENSE00000651479
chr19:
1615519-1615284
236
TFE2_HUMAN
529-608
80
0
-
-
1.19b
ENST00000262965
19b
ENSE00001152057
chr19:
1611848-1609293
2556
TFE2_HUMAN
608-654
47
0
-
-
2.1
ENST00000263253
1
ENSE00001343011
chr22:
41487790-41489102
1313
EP300_HUMAN
1-32
32
0
-
-
2.2
ENST00000263253
2
ENSE00000654991
chr22:
41513191-41513825
635
EP300_HUMAN
32-243
212
0
-
-
2.3
ENST00000263253
3
ENSE00000655017
chr22:
41521868-41522044
177
EP300_HUMAN
244-302
59
0
-
-
2.4
ENST00000263253
4
ENSE00000655023
chr22:
41523491-41523752
262
EP300_HUMAN
303-390
88
0
-
-
2.5
ENST00000263253
5
ENSE00000655024
chr22:
41525894-41526007
114
EP300_HUMAN
390-428
39
0
-
-
2.6
ENST00000263253
6
ENSE00001336414
chr22:
41527392-41527637
246
EP300_HUMAN
428-510
83
0
-
-
2.7
ENST00000263253
7
ENSE00000655043
chr22:
41531817-41531910
94
EP300_HUMAN
510-541
32
0
-
-
2.8
ENST00000263253
8
ENSE00000655048
chr22:
41533657-41533794
138
EP300_HUMAN
541-587
47
0
-
-
2.9
ENST00000263253
9
ENSE00000655049
chr22:
41536144-41536261
118
EP300_HUMAN
587-626
40
0
-
-
2.10
ENST00000263253
10
ENSE00000655078
chr22:
41537052-41537226
175
EP300_HUMAN
627-685
59
0
-
-
2.11
ENST00000263253
11
ENSE00000655093
chr22:
41542743-41542820
78
EP300_HUMAN
685-711
27
0
-
-
2.12
ENST00000263253
12
ENSE00000655110
chr22:
41543841-41543950
110
EP300_HUMAN
711-747
37
0
-
-
2.13
ENST00000263253
13
ENSE00001336303
chr22:
41545042-41545179
138
EP300_HUMAN
748-793
46
0
-
-
2.14
ENST00000263253
14
ENSE00000655148
chr22:
41545765-41546202
438
EP300_HUMAN
794-939
146
0
-
-
2.15
ENST00000263253
15
ENSE00000880436
chr22:
41547837-41548016
180
EP300_HUMAN
940-999
60
0
-
-
2.16
ENST00000263253
16
ENSE00000880437
chr22:
41548210-41548354
145
EP300_HUMAN
1000-1048
49
0
-
-
2.17
ENST00000263253
17
ENSE00000880438
chr22:
41550999-41551117
119
EP300_HUMAN
1048-1087
40
0
-
-
2.18
ENST00000263253
18
ENSE00000655228
chr22:
41553173-41553412
240
EP300_HUMAN
1088-1167
80
0
-
-
2.19
ENST00000263253
19
ENSE00000655266
chr22:
41554416-41554504
89
EP300_HUMAN
1168-1197
30
0
-
-
2.20
ENST00000263253
20
ENSE00001302097
chr22:
41556646-41556726
81
EP300_HUMAN
1197-1224
28
0
-
-
2.21
ENST00000263253
21
ENSE00000655295
chr22:
41558727-41558783
57
EP300_HUMAN
1224-1243
20
0
-
-
2.22
ENST00000263253
22
ENSE00001307142
chr22:
41560057-41560134
78
EP300_HUMAN
1243-1269
27
0
-
-
2.23
ENST00000263253
23
ENSE00000655323
chr22:
41562603-41562670
68
EP300_HUMAN
1269-1292
24
0
-
-
2.24
ENST00000263253
24
ENSE00000655331
chr22:
41564453-41564603
151
EP300_HUMAN
1292-1342
51
0
-
-
2.25
ENST00000263253
25
ENSE00000655352
chr22:
41564725-41564871
147
EP300_HUMAN
1342-1391
50
0
-
-
2.26
ENST00000263253
26
ENSE00001730907
chr22:
41565507-41565620
114
EP300_HUMAN
1391-1429
39
0
-
-
2.27
ENST00000263253
27
ENSE00000655374
chr22:
41566410-41566575
166
EP300_HUMAN
1429-1484
56
0
-
-
2.28
ENST00000263253
28
ENSE00000655406
chr22:
41568503-41568667
165
EP300_HUMAN
1485-1539
55
0
-
-
2.29
ENST00000263253
29
ENSE00000655428
chr22:
41569627-41569788
162
EP300_HUMAN
1540-1593
54
0
-
-
2.30
ENST00000263253
30
ENSE00000655442
chr22:
41572251-41572532
282
EP300_HUMAN
1594-1687
94
0
-
-
2.31
ENST00000263253
31
ENSE00001177198
chr22:
41572777-41576081
3305
EP300_HUMAN
1688-2414
727
1
B:1721-1812
92
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (675 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2MH0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help