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2MG9
Asym. Unit
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Asym.Unit (100 KB)
Biol.Unit 1 (7 KB)
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Models
(20 )
Title
:
TRUNCATED EGF-A
Authors
:
C. I. Schroeder, K. Rosengren
Date
:
30 Oct 13 (Deposition) - 02 Apr 14 (Release) - 02 Apr 14 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Egf-A, Disulfide Rich, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. I. Schroeder, J. E. Swedberg, J. M. Withka, K. J. Rosengren, M. Akcan D. J. Clayton, N. L. Daly, O. Cheneval, K. A. Borzilleri, M. Griffor, I. Stock, B. Colless, P. Walsh, P. Sunderland, A. Reyes, R. Dullea, M. Ammirati, S. Liu, K. F. Mcclure, M. Tu, S. K. Bhattacharya, S. Liras, D. A. Price, D. J. Craik
Design And Synthesis Of Truncated Egf-A Peptides That Restore Ldl-R Recycling In The Presence Of Pcsk9 In Vitro.
Chem. Biol. V. 21 284 2014
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: AMINO GROUP (NH2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
NH2
1
Mod. Amino Acid
AMINO GROUP
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:2 , GLU A:4 , ASP A:18 , LEU A:19 , GLY A:22
BINDING SITE FOR RESIDUE CA A 101
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SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_072841 (G1R, chain A, )
02: VAR_005360 (C5F, chain A, )
03: VAR_062376 (C5R, chain A, )
04: VAR_005359 (C5Y, chain A, )
05: VAR_072842 (S13C, chain A, )
06: VAR_005361 (H14Y, chain A, )
07: VAR_067196 (C16F, chain A, )
08: VAR_005362 (C16Y, chain A, )
09: VAR_005363 (G22S, chain A, )
10: VAR_005364 (C25S, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_072841
G
314
R
LDLR_HUMAN
Unclassified
---
A
G
1
R
02
UniProt
VAR_005360
C
318
F
LDLR_HUMAN
Disease (FH)
---
A
C
5
F
03
UniProt
VAR_062376
C
318
R
LDLR_HUMAN
Disease (FH)
---
A
C
5
R
04
UniProt
VAR_005359
C
318
Y
LDLR_HUMAN
Unclassified
---
A
C
5
Y
05
UniProt
VAR_072842
S
326
C
LDLR_HUMAN
Unclassified
---
A
S
13
C
06
UniProt
VAR_005361
H
327
Y
LDLR_HUMAN
Disease (FH)
---
A
H
14
Y
07
UniProt
VAR_067196
C
329
F
LDLR_HUMAN
Disease (FH)
---
A
C
16
F
08
UniProt
VAR_005362
C
329
Y
LDLR_HUMAN
Disease (FH)
---
A
C
16
Y
09
UniProt
VAR_005363
G
335
S
LDLR_HUMAN
Unclassified
---
A
G
22
S
10
UniProt
VAR_005364
C
338
S
LDLR_HUMAN
Disease (FH)
---
A
C
25
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (A:1-26|-)
2: ASX_HYDROXYL (A:16-26|-)
3: EGF_2 (A:25-26|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
LDLR_HUMAN
314-353
354-393
1
A:1-26
-
2
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
LDLR_HUMAN
329-340
368-379
1
A:16-26
-
3
EGF_2
PS01186
EGF-like domain signature 2.
LDLR_HUMAN
338-352
377-392
1
A:25-26
-
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (100 KB)
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