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Getting 'Exon' information from database.
2MCY
Asym. Unit
Info
Asym.Unit (657 KB)
Biol.Unit 1 (34 KB)
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Models
(20 )
Title
:
CR1 SUSHI DOMAINS 2 AND 3
Authors
:
H. J. Park, M. J. Guariento, M. Maciejewski, R. Hauart, W. Tham, A. F. Cow C. Q. Schmidt, H. Martens, K. M. Liszewski, D. Hourcade, P. N. Barlow, J. P. Atkinson
Date
:
27 Aug 13 (Deposition) - 13 Nov 13 (Release) - 22 Jan 14 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Cr1, Pfrh4, Malaria, Ccp, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Park, M. Guariento, M. Maciejewski, R. Hauhart, W. H. Tham, A. F. Cowman, C. Q. Schmidt, H. D. Mertens, M. K. Liszewski, D. E. Hourcade, P. N. Barlow, J. P. Atkinson
Using Mutagenesis And Structural Biology To Map The Binding Site For The Plasmodium Falciparum Merozoite Protein Pfrh4 On The Human Immune Adherence Receptor.
J. Biol. Chem. V. 289 450 2014
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SUSHI (-|A:61-122|A:123-192|-|-|-|-|-|-|-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CR1_HUMAN
41-101
102-163
164-234
295-355
236-293
356-418
419-489
491-551
552-613
614-684
745-805
686-743
806-868
869-939
941-1001
1002-1063
1064-1134
1195-1255
1136-1193
1256-1318
1319-1389
1394-1454
1455-1516
1517-1587
1648-1708
1589-1646
1709-1771
1772-1842
1846-1906
1907-1967
2
-
A:61-122
A:123-192
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[
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]
Exons
(3, 3)
Info
All Exons
Exon 1.3a (A:61-93)
Exon 1.4 (A:93-122)
Exon 1.5 (A:122-192)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000367053
1c
ENSE00001443318
chr1:
207669502-207669733
232
CR1_HUMAN
1-41
41
0
-
-
1.2
ENST00000367053
2
ENSE00001653333
chr1:
207679249-207679428
180
CR1_HUMAN
41-101
61
0
-
-
1.3a
ENST00000367053
3a
ENSE00001772738
chr1:
207680059-207680158
100
CR1_HUMAN
101-134
34
1
A:61-93
33
1.4
ENST00000367053
4
ENSE00001701427
chr1:
207684914-207684999
86
CR1_HUMAN
134-163
30
1
A:93-122
30
1.5
ENST00000367053
5
ENSE00001655656
chr1:
207696956-207697354
399
CR1_HUMAN
163-296
134
1
A:122-192
71
1.6
ENST00000367053
6
ENSE00001645921
chr1:
207700098-207700274
177
CR1_HUMAN
296-355
60
0
-
-
1.7
ENST00000367053
7
ENSE00001599723
chr1:
207700366-207700468
103
CR1_HUMAN
355-389
35
0
-
-
1.8
ENST00000367053
8
ENSE00001691683
chr1:
207702061-207702146
86
CR1_HUMAN
389-418
30
0
-
-
1.9
ENST00000367053
9
ENSE00001728445
chr1:
207705525-207705743
219
CR1_HUMAN
418-491
74
0
-
-
1.10
ENST00000367053
10
ENSE00001753192
chr1:
207706754-207706933
180
CR1_HUMAN
491-551
61
0
-
-
1.11a
ENST00000367053
11a
ENSE00001689484
chr1:
207707542-207707641
100
CR1_HUMAN
551-584
34
0
-
-
1.12
ENST00000367053
12
ENSE00001657834
chr1:
207713326-207713411
86
CR1_HUMAN
584-613
30
0
-
-
1.22
ENST00000367053
22
ENSE00001741034
chr1:
207734084-207734482
399
CR1_HUMAN
613-746
134
0
-
-
1.23
ENST00000367053
23
ENSE00001636982
chr1:
207737209-207737385
177
CR1_HUMAN
746-805
60
0
-
-
1.24
ENST00000367053
24
ENSE00001679418
chr1:
207737477-207737579
103
CR1_HUMAN
805-839
35
0
-
-
1.25
ENST00000367053
25
ENSE00001664101
chr1:
207739183-207739268
86
CR1_HUMAN
839-868
30
0
-
-
1.26
ENST00000367053
26
ENSE00001760896
chr1:
207741169-207741387
219
CR1_HUMAN
868-941
74
0
-
-
1.27
ENST00000367053
27
ENSE00001615740
chr1:
207742404-207742583
180
CR1_HUMAN
941-1001
61
0
-
-
1.28a
ENST00000367053
28a
ENSE00001766771
chr1:
207743192-207743291
100
CR1_HUMAN
1001-1034
34
0
-
-
1.29
ENST00000367053
29
ENSE00001735040
chr1:
207748940-207749025
86
CR1_HUMAN
1034-1063
30
0
-
-
1.30
ENST00000367053
30
ENSE00001745761
chr1:
207751150-207751548
399
CR1_HUMAN
1063-1196
134
0
-
-
1.31
ENST00000367053
31
ENSE00001674858
chr1:
207753585-207753761
177
CR1_HUMAN
1196-1255
60
0
-
-
1.32
ENST00000367053
32
ENSE00001628329
chr1:
207753856-207753958
103
CR1_HUMAN
1255-1289
35
0
-
-
1.33
ENST00000367053
33
ENSE00001800449
chr1:
207755263-207755348
86
CR1_HUMAN
1289-1318
30
0
-
-
1.34
ENST00000367053
34
ENSE00001649667
chr1:
207757994-207758221
228
CR1_HUMAN
1318-1394
77
0
-
-
1.35
ENST00000367053
35
ENSE00001443342
chr1:
207760731-207760910
180
CR1_HUMAN
1394-1454
61
0
-
-
1.36
ENST00000367053
36
ENSE00001443341
chr1:
207762020-207762119
100
CR1_HUMAN
1454-1487
34
0
-
-
1.37
ENST00000367053
37
ENSE00001443339
chr1:
207780596-207780681
86
CR1_HUMAN
1487-1516
30
0
-
-
1.38b
ENST00000367053
38b
ENSE00001443338
chr1:
207782635-207783033
399
CR1_HUMAN
1516-1649
134
0
-
-
1.39
ENST00000367053
39
ENSE00001665886
chr1:
207785022-207785198
177
CR1_HUMAN
1649-1708
60
0
-
-
1.40
ENST00000367053
40
ENSE00001722915
chr1:
207785284-207785386
103
CR1_HUMAN
1708-1742
35
0
-
-
1.41
ENST00000367053
41
ENSE00001687254
chr1:
207787749-207787834
86
CR1_HUMAN
1742-1771
30
0
-
-
1.42
ENST00000367053
42
ENSE00001650414
chr1:
207789920-207790147
228
CR1_HUMAN
1771-1847
77
0
-
-
1.43
ENST00000367053
43
ENSE00001443333
chr1:
207791416-207791592
177
CR1_HUMAN
1847-1906
60
0
-
-
1.44
ENST00000367053
44
ENSE00001443332
chr1:
207793225-207793410
186
CR1_HUMAN
1906-1968
63
0
-
-
1.45
ENST00000367053
45
ENSE00001648710
chr1:
207795318-207795341
24
CR1_HUMAN
1968-1976
9
0
-
-
1.46
ENST00000367053
46
ENSE00001443330
chr1:
207796338-207796413
76
CR1_HUMAN
1976-2001
26
0
-
-
1.47a
ENST00000367053
47a
ENSE00001443329
chr1:
207803862-207803966
105
CR1_HUMAN
2001-2036
36
0
-
-
1.48c
ENST00000367053
48c
ENSE00001443328
chr1:
207812742-207813992
1251
CR1_HUMAN
2036-2039
4
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2mcya1 (A:61-122)
2a: SCOP_d2mcya2 (A:123-192)
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Protein Domains
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Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2mcya1
A:61-122
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d2mcya2
A:123-192
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (657 KB)
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