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2M5B
Asym. Unit
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Asym.Unit (1.1 MB)
Biol.Unit 1 (56 KB)
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Models
(20 )
Title
:
THE NMR STRUCTURE OF THE BID-BAK COMPLEX
Authors
:
T. Moldoveanu, C. R. Grace, R. W. Kriwacki, D. R. Green
Date
:
19 Feb 13 (Deposition) - 17 Apr 13 (Release) - 22 May 13 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Bcl-2 Family Effector Bak, Bh3-Only Protein Bid, Effector Direct Activation, Nmr Solution Structure Of Bid-Bak Complex, Mitochondrial Outer Membrane Premeabilization, Apoptosis
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Moldoveanu, C. R. Grace, F. Llambi, A. Nourse, P. Fitzgerald, K. Gehring, R. W. Kriwacki, D. R. Green
Bid-Induced Structural Changes In Bak Promote Apoptosis.
Nat. Struct. Mol. Biol. V. 20 589 2013
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 2-METHYL-L-NORLEUCINE (MK8a)
1b: 2-METHYL-L-NORLEUCINE (MK8b)
2a: AMINO GROUP (NH2a)
3a: NORLEUCINE (NLEa)
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Label:
No.
Name
Count
Type
Full Name
1
MK8
2
Mod. Amino Acid
2-METHYL-L-NORLEUCINE
2
NH2
1
Mod. Amino Acid
AMINO GROUP
3
NLE
1
Mod. Amino Acid
NORLEUCINE
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_018829 (A28V, chain A, )
2: VAR_048417 (R42H, chain A, )
3: VAR_018830 (S69R, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018829
A
28
V
BAK_HUMAN
Polymorphism
4987115
A
A
28
V
2
UniProt
VAR_048417
R
42
H
BAK_HUMAN
Polymorphism
1051911
A
R
42
H
3
UniProt
VAR_018830
S
69
R
BAK_HUMAN
Polymorphism
5745592
A
S
69
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 5)
Info
All PROSITE Patterns/Profiles
1: BH3 (A:74-88,B:86-100)
2: BCL2_FAMILY (A:78-179)
3: BH1 (A:118-136)
4: BH2 (A:170-181)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
BAK_HUMAN
74-88
1
A:74-88
BID_HUMAN
86-100
1
B:86-100
2
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
BAK_HUMAN
78-179
1
A:78-179
3
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
BAK_HUMAN
118-136
1
A:118-136
4
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
BAK_HUMAN
170-181
1
A:170-181
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Exons
(6, 6)
Info
All Exons
Exon 1.2 (A:18-24)
Exon 1.3c (A:24-69)
Exon 1.4a (A:69-117)
Exon 1.5b (A:117-177)
Exon 1.6b (A:178-186)
Exon 2.5d (B:80-102)
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All Exon Boundaries
1: Boundary 1.1b/1.2
2: Boundary 1.2/1.3c
3: Boundary 1.3c/1.4a
4: Boundary 1.4a/1.5b
5: Boundary 1.5b/1.6b
6: Boundary 1.6b/-
7: Boundary 2.4/2.5d
8: Boundary 2.5d/2.6b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000374467
1b
ENSE00001945899
chr6:
33548019-33547802
218
BAK_HUMAN
-
0
0
-
-
1.2
ENST00000374467
2
ENSE00000849371
chr6:
33545412-33545312
101
BAK_HUMAN
1-24
24
1
A:18-24
7
1.3c
ENST00000374467
3c
ENSE00000519515
chr6:
33543705-33543570
136
BAK_HUMAN
24-69
46
1
A:24-69
46
1.4a
ENST00000374467
4a
ENSE00000741329
chr6:
33543218-33543075
144
BAK_HUMAN
69-117
49
1
A:69-117
49
1.5b
ENST00000374467
5b
ENSE00001685926
chr6:
33541991-33541811
181
BAK_HUMAN
117-177
61
1
A:117-177
61
1.6b
ENST00000374467
6b
ENSE00001915603
chr6:
33541684-33540329
1356
BAK_HUMAN
178-211
34
1
A:178-186
9
2.1b
ENST00000399774
1b
ENSE00001540140
chr22:
18257258-18257147
112
BID_HUMAN
-
0
0
-
-
2.3
ENST00000399774
3
ENSE00002194975
chr22:
18232940-18232871
70
BID_HUMAN
1-4
4
0
-
-
2.4
ENST00000399774
4
ENSE00001752867
chr22:
18226779-18226569
211
BID_HUMAN
5-75
71
0
-
-
2.5d
ENST00000399774
5d
ENSE00001643928
chr22:
18222254-18222115
140
BID_HUMAN
75-121
47
1
B:80-102
23
2.6b
ENST00000399774
6b
ENSE00001767385
chr22:
18220995-18220783
213
BID_HUMAN
122-192
71
0
-
-
2.7e
ENST00000399774
7e
ENSE00001856820
chr22:
18218357-18216937
1421
BID_HUMAN
193-195
3
0
-
-
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SCOP Domains
(0, 0)
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Pfam Domains
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Asym.Unit (1.1 MB)
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