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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
2M55
Asym. Unit
Info
Asym.Unit (869 KB)
Biol.Unit 1 (45 KB)
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Models
(20 )
Title
:
NMR STRUCTURE OF THE COMPLEX OF AN N-TERMINALLY ACETYLATED ALPHA-SYNUCLEIN PEPTIDE WITH CALMODULIN
Authors
:
J. M. Gruschus, T. Yap, S. Pistolesi, A. S. Maltsev, J. C. Lee
Date
:
13 Feb 13 (Deposition) - 08 May 13 (Release) - 25 Dec 13 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Protein/Peptide, Ca-Binding, Calcium Binding Protein-Protein Fibril Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Gruschus, T. L. Yap, S. Pistolesi, A. S. Maltsev, J. C. Lee
Nmr Structure Of Calmodulin Complexed To An N-Terminally Acetylated Alpha-Synuclein Peptide.
Biochemistry V. 52 3436 2013
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: AMINO GROUP (NH2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
CA
4
Ligand/Ion
CALCIUM ION
3
NH2
1
Mod. Amino Acid
AMINO GROUP
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:20 , ASP A:22 , ASP A:24 , THR A:26 , THR A:28 , GLU A:31
BINDING SITE FOR RESIDUE CA A 300
2
AC2
SOFTWARE
ASP A:56 , ASP A:58 , ASN A:60 , THR A:62 , GLU A:67
BINDING SITE FOR RESIDUE CA A 301
3
AC3
SOFTWARE
ASP A:93 , ASP A:95 , ASN A:97 , TYR A:99 , GLU A:104
BINDING SITE FOR RESIDUE CA A 302
4
AC4
SOFTWARE
ASP A:129 , ASP A:131 , ASP A:133 , GLN A:135 , GLU A:140
BINDING SITE FOR RESIDUE CA A 303
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SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_069222 (N53I, chain A, )
02: VAR_048585 (M72T, chain A, )
03: VAR_073275 (F89L, chain A, )
04: VAR_073276 (D95V, chain A, )
05: VAR_073277 (N97I, chain A, )
06: VAR_069223 (N97S, chain A, )
07: VAR_073278 (D129G, chain A, )
08: VAR_073279 (D131E, chain A, )
09: VAR_073280 (D133H, chain A, )
10: VAR_073281 (Q135P, chain A, )
11: VAR_073282 (F141L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_069222
N
54
I
CALM_HUMAN
Disease (CPVT4)
---
A
N
53
I
02
UniProt
VAR_048585
M
73
T
CALM_HUMAN
Polymorphism
41389749
A
M
72
T
03
UniProt
VAR_073275
F
90
L
CALM_HUMAN
Disease (LQT14)
---
A
F
89
L
04
UniProt
VAR_073276
D
96
V
CALM_HUMAN
Disease (LQT15)
---
A
D
95
V
05
UniProt
VAR_073277
N
98
I
CALM_HUMAN
Disease (LQT15)
---
A
N
97
I
06
UniProt
VAR_069223
N
98
S
CALM_HUMAN
Disease (CPVT4)
---
A
N
97
S
07
UniProt
VAR_073278
D
130
G
CALM_HUMAN
Disease (LQT14)
---
A
D
129
G
08
UniProt
VAR_073279
D
132
E
CALM_HUMAN
Disease (LQT15)
---
A
D
131
E
09
UniProt
VAR_073280
D
134
H
CALM_HUMAN
Disease (LQT15)
---
A
D
133
H
10
UniProt
VAR_073281
Q
136
P
CALM_HUMAN
Disease (LQT15)
---
A
Q
135
P
11
UniProt
VAR_073282
F
142
L
CALM_HUMAN
Disease (LQT14)
---
A
F
141
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:7-42|A:43-78|A:80-115|A:116-148,...)
2: EF_HAND_1 (A:20-32|A:56-68|A:93-105|A:129-141...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM1_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-148
CALM2_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-148
CALM3_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-148
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM1_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:129-141
CALM2_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:129-141
CALM3_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:129-141
[
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Exons
(1, 1)
Info
All Exons
Exon 1.4b (B:201-220)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.4b
2: Boundary 1.4b/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000394991
2a
ENSE00001946342
chr4:
90758379-90758113
267
SYUA_HUMAN
-
0
0
-
-
1.4b
ENST00000394991
4b
ENSE00001407446
chr4:
90756843-90756698
146
SYUA_HUMAN
1-41
41
1
B:201-220
20
1.5
ENST00000394991
5
ENSE00000970012
chr4:
90749335-90749294
42
SYUA_HUMAN
41-55
15
0
-
-
1.6b
ENST00000394991
6b
ENSE00000970013
chr4:
90743539-90743397
143
SYUA_HUMAN
55-102
48
0
-
-
1.7
ENST00000394991
7
ENSE00000970014
chr4:
90650428-90650345
84
SYUA_HUMAN
103-130
28
0
-
-
1.8d
ENST00000394991
8d
ENSE00001351104
chr4:
90647811-90647204
608
SYUA_HUMAN
131-140
10
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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Asym.Unit (869 KB)
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