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2M32
Asym. Unit
Info
Asym.Unit (710 KB)
Biol.Unit 1 (72 KB)
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Models
(10 )
Title
:
ALPHA-1 INTEGRIN I-DOMAIN IN COMPLEX WITH GLOGEN TRIPLE HELICAL PEPTIDE
Authors
:
Y. Chin, S. Headey, B. Mohanty, P. Mcewan, J. Swarbrick, T. Mulhern, J. E J. Simpson, M. Scanlon
Date
:
07 Jan 13 (Deposition) - 06 Nov 13 (Release) - 12 Feb 14 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,C,D (10 x)
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Alpha-1 Integrin, I-Domain, Glogen, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. K. Chin, S. J. Headey, B. Mohanty, R. Patil, P. A. Mcewan, J. D. Swarbrick, T. D. Mulhern, J. Emsley, J. S. Simpson, M. J. Scanlon
The Structure Of Integrin Alpha 1I Domain In Complex With A Collagen-Mimetic Peptide.
J. Biol. Chem. V. 288 36796 2013
[
close entry info
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
2a: 4-HYDROXYPROLINE (HYPa)
2b: 4-HYDROXYPROLINE (HYPb)
2c: 4-HYDROXYPROLINE (HYPc)
2d: 4-HYDROXYPROLINE (HYPd)
2e: 4-HYDROXYPROLINE (HYPe)
2f: 4-HYDROXYPROLINE (HYPf)
2g: 4-HYDROXYPROLINE (HYPg)
2h: 4-HYDROXYPROLINE (HYPh)
2i: 4-HYDROXYPROLINE (HYPi)
2j: 4-HYDROXYPROLINE (HYPj)
2k: 4-HYDROXYPROLINE (HYPk)
2l: 4-HYDROXYPROLINE (HYPl)
2m: 4-HYDROXYPROLINE (HYPm)
2n: 4-HYDROXYPROLINE (HYPn)
2o: 4-HYDROXYPROLINE (HYPo)
2p: 4-HYDROXYPROLINE (HYPp)
2q: 4-HYDROXYPROLINE (HYPq)
2r: 4-HYDROXYPROLINE (HYPr)
3a: MAGNESIUM ION (MGa)
4a: AMINO GROUP (NH2a)
4b: AMINO GROUP (NH2b)
4c: AMINO GROUP (NH2c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
3
Mod. Amino Acid
ACETYL GROUP
2
HYP
18
Mod. Amino Acid
4-HYDROXYPROLINE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
NH2
3
Mod. Amino Acid
AMINO GROUP
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:13 , SER A:15 , THR A:81 , GLU C:212
BINDING SITE FOR RESIDUE MG A 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: VWFA (A:5-188)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VWFA
PS50234
VWFA domain profile.
ITA1_HUMAN
172-355
1
A:5-188
[
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Exons
(4, 4)
Info
All Exons
Exon 1.8 (A:1-41)
Exon 1.10 (A:42-91)
Exon 1.12b (A:91-141)
Exon 1.13 (A:142-192)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7/1.8
2: Boundary 1.8/1.10
3: Boundary 1.10/1.12b
4: Boundary 1.12b/1.13
5: Boundary 1.13/1.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000282588
1a
ENSE00002078767
chr5:
52083730-52084248
519
ITA1_HUMAN
1-21
21
0
-
-
1.3
ENST00000282588
3
ENSE00001006625
chr5:
52145199-52145319
121
ITA1_HUMAN
21-61
41
0
-
-
1.4
ENST00000282588
4
ENSE00001145956
chr5:
52157281-52157393
113
ITA1_HUMAN
61-99
39
0
-
-
1.6
ENST00000282588
6
ENSE00001006627
chr5:
52160597-52160685
89
ITA1_HUMAN
99-128
30
0
-
-
1.7
ENST00000282588
7
ENSE00001006615
chr5:
52160805-52160916
112
ITA1_HUMAN
129-166
38
0
-
-
1.8
ENST00000282588
8
ENSE00001006626
chr5:
52161524-52161651
128
ITA1_HUMAN
166-208
43
1
A:1-41
41
1.10
ENST00000282588
10
ENSE00001006605
chr5:
52177705-52177853
149
ITA1_HUMAN
209-258
50
1
A:42-91
50
1.12b
ENST00000282588
12b
ENSE00001006634
chr5:
52183647-52183797
151
ITA1_HUMAN
258-308
51
1
A:91-141
51
1.13
ENST00000282588
13
ENSE00001006613
chr5:
52189506-52189671
166
ITA1_HUMAN
309-364
56
1
A:142-192
51
1.14
ENST00000282588
14
ENSE00001006632
chr5:
52193286-52193359
74
ITA1_HUMAN
364-388
25
0
-
-
1.15
ENST00000282588
15
ENSE00001006633
chr5:
52194069-52194213
145
ITA1_HUMAN
389-437
49
0
-
-
1.16b
ENST00000282588
16b
ENSE00001006619
chr5:
52201593-52201738
146
ITA1_HUMAN
437-485
49
0
-
-
1.17
ENST00000282588
17
ENSE00001006608
chr5:
52204728-52204871
144
ITA1_HUMAN
486-533
48
0
-
-
1.18
ENST00000282588
18
ENSE00001006611
chr5:
52205992-52206249
258
ITA1_HUMAN
534-619
86
0
-
-
1.19
ENST00000282588
19
ENSE00001006624
chr5:
52211294-52211424
131
ITA1_HUMAN
620-663
44
0
-
-
1.20
ENST00000282588
20
ENSE00001006604
chr5:
52214562-52214728
167
ITA1_HUMAN
663-719
57
0
-
-
1.21
ENST00000282588
21
ENSE00001006621
chr5:
52216162-52216298
137
ITA1_HUMAN
719-764
46
0
-
-
1.22
ENST00000282588
22
ENSE00001006614
chr5:
52218607-52218717
111
ITA1_HUMAN
765-801
37
0
-
-
1.23
ENST00000282588
23
ENSE00001006620
chr5:
52221108-52221317
210
ITA1_HUMAN
802-871
70
0
-
-
1.24
ENST00000282588
24
ENSE00001006609
chr5:
52223414-52223494
81
ITA1_HUMAN
872-898
27
0
-
-
1.25
ENST00000282588
25
ENSE00001006612
chr5:
52225455-52225531
77
ITA1_HUMAN
899-924
26
0
-
-
1.26b
ENST00000282588
26b
ENSE00001006623
chr5:
52227877-52227966
90
ITA1_HUMAN
924-954
31
0
-
-
1.26c
ENST00000282588
26c
ENSE00001006622
chr5:
52229724-52229826
103
ITA1_HUMAN
954-988
35
0
-
-
1.27
ENST00000282588
27
ENSE00001006631
chr5:
52233231-52233344
114
ITA1_HUMAN
989-1026
38
0
-
-
1.28
ENST00000282588
28
ENSE00001006618
chr5:
52235420-52235521
102
ITA1_HUMAN
1027-1060
34
0
-
-
1.29
ENST00000282588
29
ENSE00001006617
chr5:
52235670-52235774
105
ITA1_HUMAN
1061-1095
35
0
-
-
1.30
ENST00000282588
30
ENSE00001006630
chr5:
52240773-52240865
93
ITA1_HUMAN
1096-1126
31
0
-
-
1.31
ENST00000282588
31
ENSE00001006607
chr5:
52243175-52243291
117
ITA1_HUMAN
1127-1165
39
0
-
-
1.32c
ENST00000282588
32c
ENSE00001006629
chr5:
52248237-52252327
4091
ITA1_HUMAN
1166-1179
14
0
-
-
[
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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Asym.Unit (710 KB)
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