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2M0P
Asym. Unit
Info
Asym.Unit (242 KB)
Biol.Unit 1 (13 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE TENTH COMPLEMENT TYPE REPEAT OF HUMAN MEGALIN
Authors
:
R. Dagil, B. Kragelund
Date
:
01 Nov 12 (Deposition) - 09 Jan 13 (Release) - 19 Jun 13 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Complement Type Repeat, Receptor, Megalin, Ldl Receptor Family, Lrp2, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Dagil, C. O'Shea, A. Nykjar, A. M. Bonvin, B. B. Kragelund
Gentamicin Binds To The Megalin Receptor As A Competitive Inhibitor Using The Common Ligand Binding Motif Of Complement Type Repeats: Insight From The Nmr Structure Of The 10Th Complement Type Repeat Domain Alone And In Complex With Gentamicin.
J. Biol. Chem. V. 288 4424 2013
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Hetero Components
(1, 1)
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All Hetero Components
1a: CALCIUM ION (CAa)
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:1126 , ASP A:1129 , ASP A:1131 , ASP A:1133 , ASP A:1139 , GLU A:1140
BINDING SITE FOR RESIDUE CA A 1201
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: LDLRA_2 (-|-|-|-|-|-|-|-|-|A:1108-1144|A:11...)
2: LDLRA_1 (-|-|-|-|-|-|-|A:1121-1143|-|-|-|-|...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LDLRA_2
PS50068
LDL-receptor class A (LDLRA) domain profile.
LRP2_HUMAN
27-63
66-104
107-143
146-180
182-218
221-257
265-308
1025-1061
1066-1102
1108-1144
1148-1184
1186-1223
1229-1267
1270-1306
1304-1349
2699-2737
2740-2776
2779-2818
2821-2860
2863-2900
2905-2944
2947-2989
2992-3028
3031-3069
3074-3110
3511-3549
3552-3590
3593-3631
3634-3672
3677-3715
3718-3755
3758-3794
3797-3833
3841-3879
3882-3921
3927-3963
2
-
-
-
-
-
-
-
-
-
A:1108-1144
A:1148-1148
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
LDLRA_1
PS01209
LDL-receptor class A (LDLRA) domain signature.
LRP2_HUMAN
40-62
80-103
120-142
195-217
234-256
1038-1060
1079-1101
1121-1143
1161-1183
1200-1222
1243-1266
1283-1305
1325-1348
2712-2736
2753-2775
2835-2859
2876-2899
2918-2943
3005-3027
3044-3068
3087-3109
3525-3548
3606-3630
3647-3671
3692-3714
3732-3754
3771-3793
3810-3832
3854-3878
3896-3920
3940-3962
1
-
-
-
-
-
-
-
A:1121-1143
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2m0pa_ (A:)
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Protein Domains
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
LDL receptor-like module
(20)
Superfamily
:
LDL receptor-like module
(20)
Family
:
automated matches
(1)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2m0pa_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (242 KB)
Header - Asym.Unit
Biol.Unit 1 (13 KB)
Header - Biol.Unit 1
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