PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2M0D
Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (10 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF MIZ-1 ZINC FINGER 5
Authors
:
D. Bernard, M. Bedard, J. Bilodeau, P. Lavigne
Date
:
24 Oct 12 (Deposition) - 14 Nov 12 (Release) - 27 Apr 16 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
C2H2 Zinc Fingers, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Bernard, M. Bedard, J. Bilodeau, P. Lavigne
Nmr Structure Note: Structure Of Miz-1 Zinc Fingers 5 To 7
To Be Published
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:6 , CYS A:9 , HIS A:22 , HIS A:26
BINDING SITE FOR RESIDUE ZN A 101
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (-|-|-|-|A:6-26|-|-|-|-|-|-|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
ZBT17_HUMAN
308-328
336-356
364-384
392-412
420-440
448-468
476-496
504-524
530-552
560-580
588-608
616-637
719-739
1
-
-
-
-
A:6-26
-
-
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.10b (A:1-30)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.9/1.10b
2: Boundary 1.10b/1.10i
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000375743
1b
ENSE00001839520
chr1:
16302621-16302478
144
ZBT17_HUMAN
-
0
0
-
-
1.2
ENST00000375743
2
ENSE00001348924
chr1:
16299620-16299534
87
ZBT17_HUMAN
-
0
0
-
-
1.4
ENST00000375743
4
ENSE00002171255
chr1:
16274992-16274786
207
ZBT17_HUMAN
1-69
69
0
-
-
1.6b
ENST00000375743
6b
ENSE00001695578
chr1:
16273618-16273430
189
ZBT17_HUMAN
69-132
64
0
-
-
1.7b
ENST00000375743
7b
ENSE00001722255
chr1:
16272789-16272649
141
ZBT17_HUMAN
132-179
48
0
-
-
1.7h
ENST00000375743
7h
ENSE00001738306
chr1:
16272335-16272210
126
ZBT17_HUMAN
179-221
43
0
-
-
1.8b
ENST00000375743
8b
ENSE00001755221
chr1:
16271697-16271432
266
ZBT17_HUMAN
221-309
89
0
-
-
1.9
ENST00000375743
9
ENSE00001602262
chr1:
16271334-16271192
143
ZBT17_HUMAN
310-357
48
0
-
-
1.10b
ENST00000375743
10b
ENSE00001684066
chr1:
16271095-16270795
301
ZBT17_HUMAN
357-457
101
1
A:1-30
30
1.10i
ENST00000375743
10i
ENSE00000751342
chr1:
16270390-16270303
88
ZBT17_HUMAN
458-487
30
0
-
-
1.10k
ENST00000375743
10k
ENSE00000751341
chr1:
16270210-16270094
117
ZBT17_HUMAN
487-526
40
0
-
-
1.11b
ENST00000375743
11b
ENSE00000751340
chr1:
16270014-16269894
121
ZBT17_HUMAN
526-566
41
0
-
-
1.11f
ENST00000375743
11f
ENSE00000751339
chr1:
16269689-16269559
131
ZBT17_HUMAN
566-610
45
0
-
-
1.13a
ENST00000375743
13a
ENSE00000751338
chr1:
16269233-16269024
210
ZBT17_HUMAN
610-680
71
0
-
-
1.13e
ENST00000375743
13e
ENSE00002146007
chr1:
16268915-16268826
90
ZBT17_HUMAN
680-710
31
0
-
-
1.14b
ENST00000375743
14b
ENSE00001653173
chr1:
16268747-16268364
384
ZBT17_HUMAN
710-803
94
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (182 KB)
Header - Asym.Unit
Biol.Unit 1 (10 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2M0D
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help