PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2LZ1
Asym. Unit
Info
Asym.Unit (594 KB)
Biol.Unit 1 (31 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION NMR STRUCTURE OF THE DNA-BINDING DOMAIN OF HUMAN NF-E2-RELATED FACTOR 2, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HR3520O
Authors
:
A. Eletsky, S. V. S. R. K. Pulavarti, D. Lee, E. Kohan, H. Janjua, R. Xiao, T. B. Acton, J. K. Everett, G. T. Montelione, T. Szyperski, Northeast Structural Genomics Consortium (Nesg)
Date
:
22 Sep 12 (Deposition) - 28 Nov 12 (Release) - 28 Nov 12 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Structural Genomics, Northeast Structural Genomics Consortium (Nesg), Psi-Biology, Protein Structure Initiative, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Eletsky, S. V. S. R. K. Pulavarti, D. Lee, E. Kohan, H. Janjua, R. Xiao T. B. Acton, J. K. Everett, G. T. Montelione, T. Szyperski
Solution Nmr Structure Of The Dna-Binding Domain Of Human Nf-E2-Related Factor 2, Northeast Structural Genomics Consortium (Nesg) Target Hr3520O
To Be Published
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: BZIP (A:64-90)
2: BZIP_BASIC (A:69-84)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BZIP
PS50217
Basic-leucine zipper (bZIP) domain profile.
NF2L2_HUMAN
497-560
1
A:64-90
2
BZIP_BASIC
PS00036
Basic-leucine zipper (bZIP) domain signature.
NF2L2_HUMAN
502-517
1
A:69-84
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.11d (A:1-90)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.10c/1.11d
2: Boundary 1.11d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5a
ENST00000397062
5a
ENSE00001782317
chr2:
178129859-178129260
600
NF2L2_HUMAN
1-15
15
0
-
-
1.9c
ENST00000397062
9c
ENSE00001743774
chr2:
178098999-178098733
267
NF2L2_HUMAN
16-104
89
0
-
-
1.10a
ENST00000397062
10a
ENSE00001650889
chr2:
178098067-178097978
90
NF2L2_HUMAN
105-134
30
0
-
-
1.10c
ENST00000397062
10c
ENSE00001667839
chr2:
178097311-178097120
192
NF2L2_HUMAN
135-198
64
0
-
-
1.11d
ENST00000397062
11d
ENSE00001920137
chr2:
178096736-178095033
1704
NF2L2_HUMAN
199-605
407
1
A:1-90
90
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (594 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2LZ1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
