PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2LVZ
Asym. Unit
Info
Asym.Unit (767 KB)
Biol.Unit 1 (40 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF A EOSINOPHIL CATIONIC PROTEIN-TRISACCHARIDE HEPARIN MIMETIC COMPLEX
Authors
:
M. Garcia Mayoral, A. Canales, D. Diaz, J. Lopez Prados, M. Moussaoui Paz, J. Angulo, P. Nieto, J. Jimenez Barbero, E. Boix, M. Bruix
Date
:
17 Jul 12 (Deposition) - 31 Jul 13 (Release) - 31 Jul 13 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Heparin, Molecular Recognition, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. F. Garcia-Mayoral, A. Canales, D. Diaz, J. Lopez-Prados, M. Moussaoui, J. L. De Paz, J. Angulo, P. M. Nieto, J. Jimenez-Barbero E. Boix, M. Bruix
Insights Into The Glycosaminoglycan-Mediated Cytotoxic Mechanism Of Eosinophil Cationic Protein Revealed By Nmr.
Acs Chem. Biol. V. 8 144 2013
[
close entry info
]
Hetero Components
(3, 3)
Info
All Hetero Components
1a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
2a: PROPAN-2-YL 2-DEOXY-6-O-SULFO-2-(S... (LVZa)
3a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IDS
1
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2
LVZ
1
Ligand/Ion
PROPAN-2-YL 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSIDE
3
SGN
1
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:7 , GLN A:14 , ARG A:34 , LYS A:38 , ASN A:39 , GLN A:40 , VAL A:127 , HIS A:128
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 201 TO 203
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_014109 (R45C, chain A, )
2: VAR_013149 (R97R, chain A, )
3: VAR_029017 (G103R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014109
R
72
C
ECP_HUMAN
Polymorphism
151169198
A
R
45
C
2
UniProt
VAR_013149
T
124
R
ECP_HUMAN
Polymorphism
2073342
A
R
97
R
3
UniProt
VAR_029017
G
130
R
ECP_HUMAN
Polymorphism
12147890
A
G
103
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNASE_PANCREATIC (A:37-43)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_PANCREATIC
PS00127
Pancreatic ribonuclease family signature.
ECP_HUMAN
64-70
1
A:37-43
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.2 (A:1-133)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000304639
1
ENSE00001137146
chr14:
21359558-21359610
53
ECP_HUMAN
-
0
0
-
-
1.2
ENST00000304639
2
ENSE00001124180
chr14:
21359841-21360507
667
ECP_HUMAN
1-162
162
1
A:1-133
133
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2lvza_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
RNase A-like
(356)
Superfamily
:
RNase A-like
(356)
Family
:
Ribonuclease A-like
(347)
Protein domain
:
Eosinophil cationic protein (ECP), ribonuclease 3
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2lvza_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (767 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2LVZ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
