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2LRR
Asym. Unit
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Asym.Unit (384 KB)
Biol.Unit 1 (20 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE R3H DOMAIN FROM HUMAN SMUBP-2 IN COMPLEX WITH 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
Authors
:
K. Jaudzems, D. Zhulenkovs, G. Otting, E. Liepinsh
Date
:
12 Apr 12 (Deposition) - 24 Oct 12 (Release) - 24 Oct 12 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Dna Binding Protein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
K. Jaudzems, X. Jia, H. Yagi, D. Zhulenkovs, B. Graham, G. Otting, E. Liepinsh
Structural Basis For 5'-End-Specific Recognition Of Single-Stranded Dna By The R3H Domain From Human Smubp-2
J. Mol. Biol. V. 12 760 2012
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE (DGPa)
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Label:
No.
Name
Count
Type
Full Name
1
DGP
1
Ligand/Ion
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:752 , ARG A:755 , LEU A:756 , HIS A:759 , GLU A:763 , HIS A:769 , SER A:771 , ARG A:778
BINDING SITE FOR RESIDUE DGP A 801
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: R3H (A:723-786)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
R3H
PS51061
R3H domain profile.
SMBP2_HUMAN
723-786
1
A:723-786
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Exons
(1, 1)
Info
All Exons
Exon 1.13 (A:717-786)
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All Exon Boundaries
1: Boundary 1.12/1.13
2: Boundary 1.13/1.14
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000255078
1
ENSE00001200470
chr11:
68671319-68671506
188
SMBP2_HUMAN
1-29
29
0
-
-
1.2
ENST00000255078
2
ENSE00001064263
chr11:
68673537-68673706
170
SMBP2_HUMAN
29-86
58
0
-
-
1.3
ENST00000255078
3
ENSE00001117306
chr11:
68675613-68675805
193
SMBP2_HUMAN
86-150
65
0
-
-
1.4
ENST00000255078
4
ENSE00001117303
chr11:
68676002-68676099
98
SMBP2_HUMAN
150-183
34
0
-
-
1.5
ENST00000255078
5
ENSE00001200445
chr11:
68678908-68679071
164
SMBP2_HUMAN
183-237
55
0
-
-
1.6
ENST00000255078
6
ENSE00000737364
chr11:
68682291-68682491
201
SMBP2_HUMAN
238-304
67
0
-
-
1.7
ENST00000255078
7
ENSE00001117311
chr11:
68685204-68685351
148
SMBP2_HUMAN
305-354
50
0
-
-
1.8
ENST00000255078
8
ENSE00001117308
chr11:
68696651-68696825
175
SMBP2_HUMAN
354-412
59
0
-
-
1.9
ENST00000255078
9
ENSE00001200438
chr11:
68700767-68700949
183
SMBP2_HUMAN
412-473
62
0
-
-
1.10
ENST00000255078
10
ENSE00001200433
chr11:
68701263-68701381
119
SMBP2_HUMAN
473-513
41
0
-
-
1.11
ENST00000255078
11
ENSE00001200427
chr11:
68701932-68702026
95
SMBP2_HUMAN
513-544
32
0
-
-
1.12
ENST00000255078
12
ENSE00001200421
chr11:
68702767-68702890
124
SMBP2_HUMAN
545-586
42
0
-
-
1.13
ENST00000255078
13
ENSE00001165813
chr11:
68703705-68704559
855
SMBP2_HUMAN
586-871
286
1
A:717-786
70
1.14
ENST00000255078
14
ENSE00001200411
chr11:
68705650-68705822
173
SMBP2_HUMAN
871-928
58
0
-
-
1.15
ENST00000255078
15
ENSE00001311607
chr11:
68707002-68708069
1068
SMBP2_HUMAN
929-993
65
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2lrra_ (A:)
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
R3H domain
(4)
Family
:
R3H domain
(4)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2lrra_
A:
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CATH Domains
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