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2LRI
Asym. Unit
Info
Asym.Unit (865 KB)
Biol.Unit 1 (19 KB)
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Models
(50 )
Title
:
NMR STRUCTURE OF THE SECOND PHD FINGER OF AIRE (AIRE-PHD2)
Authors
:
M. Gaetani, F. Chignola, L. Mollica, G. Quilici, V. Mannella, D. Spilio G. Musco
Date
:
03 Apr 12 (Deposition) - 17 Oct 12 (Release) - 16 Jan 13 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : C (50 x)
Biol. Unit 1: C (1x)
Keywords
:
Zn Binding Protein Domain, Apeced, Transcription
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Gaetani, V. Matafora, M. Saare, D. Spiliotopoulos, L. Mollica, G. Quilici, F. Chignola, V. Mannella, C. Zucchelli, P. Peterson, A. Bachi, G. Musco
Aire-Phd Fingers Are Structural Hubs To Maintain The Integrity Of Chromatin-Associated Interactome.
Nucleic Acids Res. V. 40 11756 2012
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS C:15 , CYS C:18 , HIS C:35 , CYS C:38
BINDING SITE FOR RESIDUE ZN C 101
2
AC2
SOFTWARE
CYS C:27 , CYS C:30 , CYS C:53 , CYS C:56
BINDING SITE FOR RESIDUE ZN C 102
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_076953 (V65A, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076953
V
484
A
AIRE_HUMAN
Unclassified
769470638
C
V
65
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZF_PHD_1 (-|C:15-56)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_PHD_1
PS01359
Zinc finger PHD-type signature.
AIRE_HUMAN
299-340
434-475
1
-
C:15-56
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Exons
(3, 3)
Info
All Exons
Exon 1.8b (C:1-7 (gaps))
Exon 1.9 (C:8-48)
Exon 1.10b (C:48-66)
View:
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All Exon Boundaries
1: Boundary 1.7/1.8b
2: Boundary 1.8b/1.9
3: Boundary 1.9/1.10b
4: Boundary 1.10b/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000291582
1c
ENSE00001050710
chr21:
45705763-45706021
259
AIRE_HUMAN
1-44
44
0
-
-
1.2
ENST00000291582
2
ENSE00001050715
chr21:
45706440-45706614
175
AIRE_HUMAN
45-103
59
0
-
-
1.3a
ENST00000291582
3a
ENSE00001050714
chr21:
45706861-45707016
156
AIRE_HUMAN
103-155
53
0
-
-
1.3c
ENST00000291582
3c
ENSE00001050716
chr21:
45707400-45707474
75
AIRE_HUMAN
155-180
26
0
-
-
1.4a
ENST00000291582
4a
ENSE00001050703
chr21:
45708228-45708341
114
AIRE_HUMAN
180-218
39
0
-
-
1.4d
ENST00000291582
4d
ENSE00001050721
chr21:
45709540-45709685
146
AIRE_HUMAN
218-266
49
0
-
-
1.5
ENST00000291582
5
ENSE00001050719
chr21:
45709871-45709951
81
AIRE_HUMAN
267-293
27
0
-
-
1.6e
ENST00000291582
6e
ENSE00001136688
chr21:
45710978-45711093
116
AIRE_HUMAN
294-332
39
0
-
-
1.7
ENST00000291582
7
ENSE00001325901
chr21:
45712185-45712284
100
AIRE_HUMAN
332-365
34
0
-
-
1.8b
ENST00000291582
8b
ENSE00001110072
chr21:
45712876-45713058
183
AIRE_HUMAN
366-426
61
1
C:1-7 (gaps)
15
1.9
ENST00000291582
9
ENSE00001598102
chr21:
45713672-45713793
122
AIRE_HUMAN
427-467
41
1
C:8-48
41
1.10b
ENST00000291582
10b
ENSE00001675836
chr21:
45714284-45714386
103
AIRE_HUMAN
467-501
35
1
C:48-66
19
1.11
ENST00000291582
11
ENSE00001744012
chr21:
45716266-45716328
63
AIRE_HUMAN
502-522
21
0
-
-
1.12c
ENST00000291582
12c
ENSE00001643309
chr21:
45717539-45718102
564
AIRE_HUMAN
523-545
23
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain C
Asymmetric Unit 1
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Asym.Unit (865 KB)
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