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Asym. Unit
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Asym.Unit (965 KB)
Biol.Unit 1 (98 KB)
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Models
(10 )
Title
:
STRUCTURAL MODEL FOR A 40-RESIDUE BETA-AMYLOID FIBRIL WITH TWO-FOLD SYMMETRY, NEGATIVE STAGGER
Authors
:
R. Tycko, A. Petkova
Date
:
08 Dec 11 (Deposition) - 28 Dec 11 (Release) - 03 May 17 (Revision)
Method
:
SOLID-STATE NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L (10 x)
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Alzheimer'S Disease, Two-Fold Symmetry, Protein Fibril
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Paravastu, R. D. Leapman, W. M. Yau, R. Tycko
Molecular Structural Basis For Polymorphism In Alzheimer'S Beta-Amyloid Fibrils.
Proc. Natl. Acad. Sci. V. 105 18349 2008 U. S. A.
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(6, 72)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_000016 (A21G, chain A/B/C/D/E/F/G/H/I/J/K/L, )
2: VAR_014215 (E22G, chain A/B/C/D/E/F/G/H/I/J/K/L, )
3: VAR_014216 (E22K, chain A/B/C/D/E/F/G/H/I/J/K/L, )
4: VAR_000017 (E22Q, chain A/B/C/D/E/F/G/H/I/J/K/L, )
5: VAR_014217 (D23N, chain A/B/C/D/E/F/G/H/I/J/K/L, )
6: VAR_032276 (L34V, chain A/B/C/D/E/F/G/H/I/J/K/L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_000016
A
692
G
A4_HUMAN
Disease (AD1)
---
A/B/C/D/E/F/G/H/I/J/K/L
A
21
G
2
UniProt
VAR_014215
E
693
G
A4_HUMAN
Disease (AD1)
---
A/B/C/D/E/F/G/H/I/J/K/L
E
22
G
3
UniProt
VAR_014216
E
693
K
A4_HUMAN
Disease (CAA-APP)
---
A/B/C/D/E/F/G/H/I/J/K/L
E
22
K
4
UniProt
VAR_000017
E
693
Q
A4_HUMAN
Disease (CAA-APP)
---
A/B/C/D/E/F/G/H/I/J/K/L
E
22
Q
5
UniProt
VAR_014217
D
694
N
A4_HUMAN
Disease (CAA-APP)
---
A/B/C/D/E/F/G/H/I/J/K/L
D
23
N
6
UniProt
VAR_032276
L
705
V
A4_HUMAN
Disease (CAA-APP)
---
A/B/C/D/E/F/G/H/I/J/K/L
L
34
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(2, 24)
Info
All Exons
Exon 1.21b (A:9-17 | B:9-17 | C:9-17 | D:9-17 ...)
Exon 1.22a (A:18-40 | B:18-40 | C:18-40 | D:18...)
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All Exon Boundaries
1: Boundary 1.20/1.21b
2: Boundary 1.21b/1.22a
3: Boundary 1.22a/1.23f
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2f
ENST00000346798
2f
ENSE00001909719
chr21:
27542972-27542882
91
A4_HUMAN
1-19
19
0
-
-
1.5b
ENST00000346798
5b
ENSE00001612324
chr21:
27484463-27484296
168
A4_HUMAN
20-75
56
0
-
-
1.6b
ENST00000346798
6b
ENSE00001017345
chr21:
27462388-27462259
130
A4_HUMAN
76-119
44
0
-
-
1.7b
ENST00000346798
7b
ENSE00001726854
chr21:
27425664-27425552
113
A4_HUMAN
119-156
38
0
-
-
1.8a
ENST00000346798
8a
ENSE00001017348
chr21:
27423509-27423316
194
A4_HUMAN
157-221
65
0
-
-
1.9b
ENST00000346798
9b
ENSE00001303241
chr21:
27394358-27394156
203
A4_HUMAN
221-289
69
0
-
-
1.11
ENST00000346798
11
ENSE00001327560
chr21:
27372497-27372330
168
A4_HUMAN
289-345
57
0
-
-
1.12a
ENST00000346798
12a
ENSE00001309322
chr21:
27369731-27369675
57
A4_HUMAN
345-364
20
0
-
-
1.13
ENST00000346798
13
ENSE00001017338
chr21:
27354790-27354657
134
A4_HUMAN
364-408
45
0
-
-
1.14a
ENST00000346798
14a
ENSE00001608815
chr21:
27348341-27348267
75
A4_HUMAN
409-433
25
0
-
-
1.15b
ENST00000346798
15b
ENSE00001017350
chr21:
27347541-27347383
159
A4_HUMAN
434-486
53
0
-
-
1.16
ENST00000346798
16
ENSE00001299537
chr21:
27328069-27327941
129
A4_HUMAN
487-529
43
0
-
-
1.17
ENST00000346798
17
ENSE00001299406
chr21:
27327003-27326904
100
A4_HUMAN
530-563
34
0
-
-
1.19
ENST00000346798
19
ENSE00001299617
chr21:
27284274-27284053
222
A4_HUMAN
563-637
75
0
-
-
1.20
ENST00000346798
20
ENSE00001324614
chr21:
27277389-27277336
54
A4_HUMAN
637-655
19
0
-
-
1.21b
ENST00000346798
21b
ENSE00001318724
chr21:
27269985-27269885
101
A4_HUMAN
655-688
34
12
A:9-17
B:9-17
C:9-17
D:9-17
E:9-17
F:9-17
G:9-17
H:9-17
I:9-17
J:9-17
K:9-17
L:9-17
9
9
9
9
9
9
9
9
9
9
9
9
1.22a
ENST00000346798
22a
ENSE00001290140
chr21:
27264180-27264034
147
A4_HUMAN
689-737
49
12
A:18-40
B:18-40
C:18-40
D:18-40
E:18-40
F:18-40
G:18-40
H:18-40
I:18-40
J:18-40
K:18-40
L:18-40
23
23
23
23
23
23
23
23
23
23
23
23
1.23f
ENST00000346798
23f
ENSE00001725664
chr21:
27254082-27252861
1222
A4_HUMAN
738-770
33
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asym.Unit (965 KB)
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