PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2LKJ
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (8 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
STRUCTURES AND INTERACTION ANALYSES OF THE INTEGRIN ALPHA-M BETA-2 CYTOPLASMIC TAILS
Authors
:
G. L. Chua, X. Y. Tang, M. Amalraj, S. M. Tan, S. Bhattacharjya
Date
:
12 Oct 11 (Deposition) - 02 Nov 11 (Release) - 16 Nov 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Myristoylated, Mac-1 Alpha, Cytoplasmic, Serine Phosphorylated, Dpc Micelles, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. L. Chua, X. Y. Tang, M. Amalraj, S. M. Tan, S. Bhattacharjya
Structures And Interaction Analyses Of The Integrin Alphambeta2 Cytoplasmic Tails
J. Biol. Chem. 2011
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHOSERINE (SEPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_043873 (P18S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_043873
P
1146
S
ITAM_HUMAN
Polymorphism
1143678
A
P
18
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(2, 2)
Info
All Exons
Exon 1.29 (A:1-1)
Exon 1.30 (A:2-24)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.28/1.29
2: Boundary 1.29/1.30
3: Boundary 1.30/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000287497
1
ENSE00001716458
chr16:
31271288-31271413
126
ITAM_HUMAN
1-10
10
0
-
-
1.2
ENST00000287497
2
ENSE00001304825
chr16:
31273013-31273118
106
ITAM_HUMAN
10-45
36
0
-
-
1.3
ENST00000287497
3
ENSE00001802514
chr16:
31276716-31276819
104
ITAM_HUMAN
45-80
36
0
-
-
1.4
ENST00000287497
4
ENSE00001675692
chr16:
31277132-31277202
71
ITAM_HUMAN
80-103
24
0
-
-
1.5
ENST00000287497
5
ENSE00001028855
chr16:
31277351-31277468
118
ITAM_HUMAN
104-143
40
0
-
-
1.6
ENST00000287497
6
ENSE00001028857
chr16:
31282275-31282405
131
ITAM_HUMAN
143-186
44
0
-
-
1.7
ENST00000287497
7
ENSE00001191919
chr16:
31283168-31283313
146
ITAM_HUMAN
187-235
49
0
-
-
1.8
ENST00000287497
8
ENSE00001028975
chr16:
31284686-31284839
154
ITAM_HUMAN
235-286
52
0
-
-
1.9
ENST00000287497
9
ENSE00001028959
chr16:
31286870-31287020
151
ITAM_HUMAN
287-337
51
0
-
-
1.10
ENST00000287497
10
ENSE00001028953
chr16:
31287992-31288065
74
ITAM_HUMAN
337-361
25
0
-
-
1.11
ENST00000287497
11
ENSE00001028971
chr16:
31288241-31288370
130
ITAM_HUMAN
362-405
44
0
-
-
1.12
ENST00000287497
12
ENSE00001191904
chr16:
31289288-31289430
143
ITAM_HUMAN
405-452
48
0
-
-
1.13
ENST00000287497
13
ENSE00001691688
chr16:
31308835-31308975
141
ITAM_HUMAN
453-499
47
0
-
-
1.14
ENST00000287497
14
ENSE00001709132
chr16:
31309066-31309275
210
ITAM_HUMAN
500-569
70
0
-
-
1.15
ENST00000287497
15
ENSE00001028860
chr16:
31332562-31332692
131
ITAM_HUMAN
570-613
44
0
-
-
1.16
ENST00000287497
16
ENSE00001191889
chr16:
31332785-31332948
164
ITAM_HUMAN
613-668
56
0
-
-
1.17
ENST00000287497
17
ENSE00001191883
chr16:
31335720-31335874
155
ITAM_HUMAN
668-719
52
0
-
-
1.18
ENST00000287497
18
ENSE00001028868
chr16:
31335972-31336103
132
ITAM_HUMAN
720-763
44
0
-
-
1.19
ENST00000287497
19
ENSE00001028854
chr16:
31336279-31336352
74
ITAM_HUMAN
764-788
25
0
-
-
1.20
ENST00000287497
20
ENSE00001028859
chr16:
31336584-31336725
142
ITAM_HUMAN
788-835
48
0
-
-
1.21
ENST00000287497
21
ENSE00001028853
chr16:
31336821-31336943
123
ITAM_HUMAN
836-876
41
0
-
-
1.22
ENST00000287497
22
ENSE00001242102
chr16:
31338177-31338256
80
ITAM_HUMAN
877-903
27
0
-
-
1.23
ENST00000287497
23
ENSE00001191849
chr16:
31339468-31339551
84
ITAM_HUMAN
903-931
29
0
-
-
1.24
ENST00000287497
24
ENSE00001242085
chr16:
31340549-31340624
76
ITAM_HUMAN
931-956
26
0
-
-
1.25
ENST00000287497
25
ENSE00001242076
chr16:
31341119-31341226
108
ITAM_HUMAN
957-992
36
0
-
-
1.26
ENST00000287497
26
ENSE00001191843
chr16:
31341402-31341485
84
ITAM_HUMAN
993-1020
28
0
-
-
1.27
ENST00000287497
27
ENSE00001191837
chr16:
31341629-31341742
114
ITAM_HUMAN
1021-1058
38
0
-
-
1.28
ENST00000287497
28
ENSE00001191835
chr16:
31341825-31341926
102
ITAM_HUMAN
1059-1092
34
0
-
-
1.29
ENST00000287497
29
ENSE00001191829
chr16:
31342486-31342596
111
ITAM_HUMAN
1093-1129
37
1
A:1-1
1
1.30
ENST00000287497
30
ENSE00001330465
chr16:
31342957-31344213
1257
ITAM_HUMAN
1130-1152
23
1
A:2-24
23
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (124 KB)
Header - Asym.Unit
Biol.Unit 1 (8 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2LKJ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
