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2LI9
Asym. Unit
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Asym.Unit (173 KB)
Biol.Unit 1 (10 KB)
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Models
(20 )
Title
:
METAL BINDING DOMAIN OF RAT BETA-AMYLOID
Authors
:
V. Polshakov, A. Istrate, S. Kozin, A. Makarov
Date
:
25 Aug 11 (Deposition) - 18 Jan 12 (Release) - 21 Mar 12 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Alzheimer'S Disease, Dimer Formation, Zinc Binding, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. N. Istrate, P. O. Tsvetkov, A. B. Mantsyzov, A. A. Kulikova, S. A. Kozin, A. A. Makarov, V. I. Polshakov
Nmr Solution Structure Of Rat Abeta(1-16): Toward Understanding The Mechanism Of Rats' Resistance To Alzheimer'S Disease.
Biophys. J. V. 102 136 2012
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: AMINO GROUP (NH2a)
2b: AMINO GROUP (NH2b)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
NH2
2
Mod. Amino Acid
AMINO GROUP
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:6 , SER A:8 , HIS A:14 , HIS B:6 , SER B:8 , HIS B:14
BINDING SITE FOR RESIDUE ZN A 18
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(1, 2)
Info
All Exons
Exon 1.17 (A:0-17 | B:0-17)
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All Exon Boundaries
1: Boundary 1.16/1.17
2: Boundary 1.17/1.18
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENSRNOT00000048854
1b
ENSRNOE00000286380
chr11:
24693851-24693771
81
A4_RAT
1-19
19
0
-
-
1.2
ENSRNOT00000048854
2
ENSRNOE00000014739
chr11:
24641638-24641471
168
A4_RAT
20-75
56
0
-
-
1.3
ENSRNOT00000048854
3
ENSRNOE00000014741
chr11:
24623995-24623866
130
A4_RAT
76-119
44
0
-
-
1.4
ENSRNOT00000048854
4
ENSRNOE00000014742
chr11:
24602576-24602464
113
A4_RAT
119-156
38
0
-
-
1.5
ENSRNOT00000048854
5
ENSRNOE00000014743
chr11:
24600007-24599814
194
A4_RAT
157-221
65
0
-
-
1.6
ENSRNOT00000048854
6
ENSRNOE00000294559
chr11:
24579923-24579721
203
A4_RAT
221-289
69
0
-
-
1.7b
ENSRNOT00000048854
7b
ENSRNOE00000014723
chr11:
24544293-24544126
168
A4_RAT
289-345
57
0
-
-
1.8
ENSRNOT00000048854
8
ENSRNOE00000014724
chr11:
24540940-24540884
57
A4_RAT
345-364
20
0
-
-
1.10a
ENSRNOT00000048854
10a
ENSRNOE00000365316
chr11:
24530072-24529939
134
A4_RAT
364-408
45
0
-
-
1.11
ENSRNOT00000048854
11
ENSRNOE00000014727
chr11:
24524460-24524386
75
A4_RAT
409-433
25
0
-
-
1.12
ENSRNOT00000048854
12
ENSRNOE00000323227
chr11:
24523995-24523837
159
A4_RAT
434-486
53
0
-
-
1.13
ENSRNOT00000048854
13
ENSRNOE00000014730
chr11:
24513499-24513371
129
A4_RAT
487-529
43
0
-
-
1.14
ENSRNOT00000048854
14
ENSRNOE00000341359
chr11:
24512019-24511920
100
A4_RAT
530-563
34
0
-
-
1.15
ENSRNOT00000048854
15
ENSRNOE00000014732
chr11:
24479343-24479122
222
A4_RAT
563-637
75
0
-
-
1.16
ENSRNOT00000048854
16
ENSRNOE00000014733
chr11:
24472983-24472930
54
A4_RAT
637-655
19
0
-
-
1.17
ENSRNOT00000048854
17
ENSRNOE00000014734
chr11:
24467388-24467288
101
A4_RAT
655-688
34
2
A:0-17
B:0-17
18
18
1.18
ENSRNOT00000048854
18
ENSRNOE00000347544
chr11:
24463735-24463589
147
A4_RAT
689-737
49
0
-
-
1.19a
ENSRNOT00000048854
19a
ENSRNOE00000349503
chr11:
24457959-24457855
105
A4_RAT
738-770
33
0
-
-
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SCOP Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (173 KB)
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