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2LGS
Asym. Unit
Info
Asym.Unit (778 KB)
Biol.Unit 1 (767 KB)
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(1)
Title
:
FEEDBACK INHIBITION OF FULLY UNADENYLYLATED GLUTAMINE SYNTHETASE FROM SALMONELLA TYPHIMURIUM BY GLYCINE, ALANINE, AND SERINE
Authors
:
S. -H. Liaw, D. Eisenberg
Date
:
05 Aug 94 (Deposition) - 30 Nov 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Ligase(Amide Synthetase)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. H. Liaw, C. Pan, D. Eisenberg
Feedback Inhibition Of Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium By Glycine, Alanine, And Serine.
Proc. Natl. Acad. Sci. Usa V. 90 4996 1993
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 36)
Info
All Hetero Components
1a: GLUTAMIC ACID (GLUa)
1b: GLUTAMIC ACID (GLUb)
1c: GLUTAMIC ACID (GLUc)
1d: GLUTAMIC ACID (GLUd)
1e: GLUTAMIC ACID (GLUe)
1f: GLUTAMIC ACID (GLUf)
1g: GLUTAMIC ACID (GLUg)
1h: GLUTAMIC ACID (GLUh)
1i: GLUTAMIC ACID (GLUi)
1j: GLUTAMIC ACID (GLUj)
1k: GLUTAMIC ACID (GLUk)
1l: GLUTAMIC ACID (GLUl)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
2m: MANGANESE (II) ION (MNm)
2n: MANGANESE (II) ION (MNn)
2o: MANGANESE (II) ION (MNo)
2p: MANGANESE (II) ION (MNp)
2q: MANGANESE (II) ION (MNq)
2r: MANGANESE (II) ION (MNr)
2s: MANGANESE (II) ION (MNs)
2t: MANGANESE (II) ION (MNt)
2u: MANGANESE (II) ION (MNu)
2v: MANGANESE (II) ION (MNv)
2w: MANGANESE (II) ION (MNw)
2x: MANGANESE (II) ION (MNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLU
12
Mod. Amino Acid
GLUTAMIC ACID
2
MN
24
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(48, 48)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: CTA (AUTHOR)
29: CTB (UNKNOWN)
30: CTC (UNKNOWN)
31: CTD (UNKNOWN)
32: CTE (UNKNOWN)
33: CTF (UNKNOWN)
34: CTG (UNKNOWN)
35: CTH (UNKNOWN)
36: CTI (UNKNOWN)
37: CTJ (UNKNOWN)
38: CTK (UNKNOWN)
39: CTL (UNKNOWN)
40: DC1 (SOFTWARE)
41: DC2 (SOFTWARE)
42: DC3 (SOFTWARE)
43: DC4 (SOFTWARE)
44: DC5 (SOFTWARE)
45: DC6 (SOFTWARE)
46: DC7 (SOFTWARE)
47: DC8 (SOFTWARE)
48: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:131 , GLU A:212 , GLU A:220 , GLU A:471
BINDING SITE FOR RESIDUE MN A 469
02
AC2
SOFTWARE
GLU A:129 , HIS A:269 , GLU A:357
BINDING SITE FOR RESIDUE MN A 470
03
AC3
SOFTWARE
GLU B:131 , GLU B:212 , GLU B:220 , GLU B:473
BINDING SITE FOR RESIDUE MN B 471
04
AC4
SOFTWARE
GLU B:129 , HIS B:269 , GLU B:357
BINDING SITE FOR RESIDUE MN B 472
05
AC5
SOFTWARE
GLU C:131 , GLU C:212 , GLU C:220 , GLU C:471
BINDING SITE FOR RESIDUE MN C 473
06
AC6
SOFTWARE
GLU C:129 , HIS C:269 , GLU C:357
BINDING SITE FOR RESIDUE MN C 474
07
AC7
SOFTWARE
GLU D:131 , GLU D:212 , GLU D:220 , GLU D:471
BINDING SITE FOR RESIDUE MN D 475
08
AC8
SOFTWARE
GLU D:129 , HIS D:269 , GLU D:357
BINDING SITE FOR RESIDUE MN D 476
09
AC9
SOFTWARE
GLU E:131 , GLU E:212 , GLU E:220 , GLU E:471
BINDING SITE FOR RESIDUE MN E 477
10
BC1
SOFTWARE
GLU E:129 , HIS E:269 , GLU E:357
BINDING SITE FOR RESIDUE MN E 478
11
BC2
SOFTWARE
GLU F:131 , GLU F:212 , GLU F:220 , GLU F:471
BINDING SITE FOR RESIDUE MN F 479
12
BC3
SOFTWARE
GLU F:129 , HIS F:269 , GLU F:357
BINDING SITE FOR RESIDUE MN F 480
13
BC4
SOFTWARE
GLU G:131 , GLU G:212 , GLU G:220 , GLU G:471
BINDING SITE FOR RESIDUE MN G 481
14
BC5
SOFTWARE
GLU G:129 , HIS G:269 , GLU G:357
BINDING SITE FOR RESIDUE MN G 482
15
BC6
SOFTWARE
GLU H:131 , GLU H:212 , GLU H:220 , GLU H:471
BINDING SITE FOR RESIDUE MN H 483
16
BC7
SOFTWARE
GLU H:129 , HIS H:269 , GLU H:357
BINDING SITE FOR RESIDUE MN H 484
17
BC8
SOFTWARE
GLU I:131 , GLU I:212 , GLU I:220 , GLU I:471
BINDING SITE FOR RESIDUE MN I 485
18
BC9
SOFTWARE
GLU I:129 , HIS I:269 , GLU I:357
BINDING SITE FOR RESIDUE MN I 486
19
CC1
SOFTWARE
GLU J:131 , GLU J:212 , GLU J:220 , GLU J:471
BINDING SITE FOR RESIDUE MN J 487
20
CC2
SOFTWARE
GLU J:129 , HIS J:269 , GLU J:357
BINDING SITE FOR RESIDUE MN J 488
21
CC3
SOFTWARE
GLU K:131 , GLU K:212 , GLU K:220 , GLU K:471
BINDING SITE FOR RESIDUE MN K 489
22
CC4
SOFTWARE
GLU K:129 , HIS K:269 , GLU K:357
BINDING SITE FOR RESIDUE MN K 490
23
CC5
SOFTWARE
GLU L:131 , GLU L:212 , GLU L:220 , GLU L:471
BINDING SITE FOR RESIDUE MN L 491
24
CC6
SOFTWARE
GLU L:129 , HIS L:269 , GLU L:357
BINDING SITE FOR RESIDUE MN L 492
25
CC7
SOFTWARE
GLU A:131 , ASN A:264 , GLY A:265 , GLY A:267 , HIS A:269 , ARG A:321 , ARG A:339 , ARG A:359 , MN A:469
BINDING SITE FOR RESIDUE GLU A 471
26
CC8
SOFTWARE
GLU B:131 , ASN B:264 , GLY B:265 , GLY B:267 , HIS B:269 , ARG B:321 , ARG B:339 , ARG B:359 , MN B:471
BINDING SITE FOR RESIDUE GLU B 473
27
CC9
SOFTWARE
GLU C:131 , ASN C:264 , GLY C:265 , GLY C:267 , HIS C:269 , ARG C:321 , ARG C:339 , ARG C:359 , MN C:473
BINDING SITE FOR RESIDUE GLU C 471
28
CTA
AUTHOR
GLU A:129 , GLU A:131 , HIS A:269 , GLU A:212 , GLU A:220 , GLU A:357 , ARG A:321 , GLY A:265 , ARG A:339 , ARG A:359 , ASP A:50 , GLU A:471 , MN A:469 , MN A:470
CATALYTIC SITE
29
CTB
UNKNOWN
GLU B:129 , GLU B:131 , HIS B:269 , GLU B:212 , GLU B:220 , GLU B:357 , ARG B:321 , GLY B:265 , ARG B:339 , ARG B:359 , ASP B:50 , GLU B:473 , MN B:471 , MN B:472
CATALYTIC SITE
30
CTC
UNKNOWN
GLU B:129 , GLU B:131 , HIS B:269 , GLU B:212 , GLU B:220 , GLU B:357 , ARG B:321 , GLY B:265 , ARG B:339 , ARG B:359 , ASP B:50 , GLU C:471 , MN C:473 , MN C:474
CATALYTIC SITE
31
CTD
UNKNOWN
GLU D:129 , GLU D:131 , HIS D:269 , GLU D:212 , GLU D:220 , GLU D:357 , ARG D:321 , GLY D:265 , ARG D:339 , ARG D:359 , ASP D:50 , GLU D:471 , MN D:475 , MN D:476
CATALYTIC SITE
32
CTE
UNKNOWN
GLU C:129 , GLU C:131 , HIS C:269 , GLU C:212 , GLU C:220 , GLU C:357 , ARG C:321 , GLY C:265 , ARG C:339 , ARG C:359 , ASP C:50 , GLU E:471 , MN E:477 , MN E:478
CATALYTIC SITE
33
CTF
UNKNOWN
GLU F:129 , GLU F:131 , HIS F:269 , GLU F:212 , GLU F:220 , GLU F:357 , ARG F:321 , GLY F:265 , ARG F:339 , ARG F:359 , ASP F:50 , GLU F:471 , MN F:479 , MN F:480
CATALYTIC SITE
34
CTG
UNKNOWN
GLU D:129 , GLU D:131 , HIS D:269 , GLU D:212 , GLU D:220 , GLU D:357 , ARG D:321 , GLY D:265 , ARG D:339 , ARG D:359 , ASP D:50 , GLU G:471 , MN G:481 , MN G:482
CATALYTIC SITE
35
CTH
UNKNOWN
GLU H:129 , GLU H:131 , HIS H:269 , GLU H:212 , GLU H:220 , GLU H:357 , ARG H:321 , GLY H:265 , ARG H:339 , ARG H:359 , ASP H:50 , GLU H:471 , MN H:483 , MN H:484
CATALYTIC SITE
36
CTI
UNKNOWN
GLU E:129 , GLU E:131 , HIS E:269 , GLU E:212 , GLU E:220 , GLU E:357 , ARG E:321 , GLY E:265 , ARG E:339 , ARG E:359 , ASP E:50 , GLU I:471 , MN I:485 , MN I:486
CATALYTIC SITE
37
CTJ
UNKNOWN
GLU J:129 , GLU J:131 , HIS J:269 , GLU J:212 , GLU J:220 , GLU J:357 , ARG J:321 , GLY J:265 , ARG J:339 , ARG J:359 , ASP J:50 , GLU J:471 , MN J:487 , MN J:488
CATALYTIC SITE
38
CTK
UNKNOWN
GLU F:129 , GLU F:131 , HIS F:269 , GLU F:212 , GLU F:220 , GLU F:357 , ARG F:321 , GLY F:265 , ARG F:339 , ARG F:359 , ASP F:50 , GLU K:471 , MN K:489 , MN K:490
CATALYTIC SITE
39
CTL
UNKNOWN
GLU L:129 , GLU L:131 , HIS L:269 , GLU L:212 , GLU L:220 , GLU L:357 , ARG L:321 , GLY L:265 , ARG L:339 , ARG L:359 , ASP L:50 , GLU L:471 , MN L:491 , MN L:492
CATALYTIC SITE
40
DC1
SOFTWARE
GLU D:131 , ASN D:264 , GLY D:265 , GLY D:267 , HIS D:269 , ARG D:321 , ARG D:339 , ARG D:359 , MN D:475
BINDING SITE FOR RESIDUE GLU D 471
41
DC2
SOFTWARE
GLU E:131 , ASN E:264 , GLY E:265 , GLY E:267 , HIS E:269 , ARG E:321 , ARG E:339 , ARG E:359 , MN E:477
BINDING SITE FOR RESIDUE GLU E 471
42
DC3
SOFTWARE
GLU F:131 , ASN F:264 , GLY F:265 , GLY F:267 , HIS F:269 , ARG F:321 , ARG F:339 , ARG F:359 , MN F:479
BINDING SITE FOR RESIDUE GLU F 471
43
DC4
SOFTWARE
GLU G:131 , ASN G:264 , GLY G:265 , GLY G:267 , HIS G:269 , ARG G:321 , ARG G:339 , ARG G:359 , MN G:481
BINDING SITE FOR RESIDUE GLU G 471
44
DC5
SOFTWARE
GLU H:131 , ASN H:264 , GLY H:265 , GLY H:267 , HIS H:269 , ARG H:321 , ARG H:339 , ARG H:359 , MN H:483
BINDING SITE FOR RESIDUE GLU H 471
45
DC6
SOFTWARE
GLU I:131 , ASN I:264 , GLY I:265 , GLY I:267 , HIS I:269 , ARG I:321 , ARG I:339 , ARG I:359 , MN I:485
BINDING SITE FOR RESIDUE GLU I 471
46
DC7
SOFTWARE
GLU J:131 , ASN J:264 , GLY J:265 , GLY J:267 , HIS J:269 , ARG J:321 , ARG J:339 , ARG J:359 , MN J:487
BINDING SITE FOR RESIDUE GLU J 471
47
DC8
SOFTWARE
GLU K:131 , ASN K:264 , GLY K:265 , GLY K:267 , HIS K:269 , ARG K:321 , ARG K:339 , ARG K:359 , MN K:489
BINDING SITE FOR RESIDUE GLU K 471
48
DC9
SOFTWARE
GLU L:131 , ASN L:264 , GLY L:265 , GLY L:267 , HIS L:269 , ARG L:321 , ARG L:339 , ARG L:359 , MN L:491
BINDING SITE FOR RESIDUE GLU L 471
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 33)
Info
All PROSITE Patterns/Profiles
1: GLNA_1 (A:49-67,C:49-67,D:49-67,E:49-67,F:...)
2: GLNA_ATP (A:258-273,C:258-273,D:258-273,E:25...)
3: GLNA_ADENYLATION (A:385-393,C:385-393,D:385-393,E:38...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLNA_1
PS00180
Glutamine synthetase signature 1.
GLN1B_SALTI
50-68
11
A:49-67
C:49-67
D:49-67
E:49-67
F:49-67
G:49-67
H:49-67
I:49-67
J:49-67
K:49-67
L:49-67
GLN1B_SALTY
50-68
11
A:49-67
C:49-67
D:49-67
E:49-67
F:49-67
G:49-67
H:49-67
I:49-67
J:49-67
K:49-67
L:49-67
2
GLNA_ATP
PS00181
Glutamine synthetase putative ATP-binding region signature.
GLN1B_SALTI
259-274
11
A:258-273
C:258-273
D:258-273
E:258-273
F:258-273
G:258-273
H:258-273
I:258-273
J:258-273
K:258-273
L:258-273
GLN1B_SALTY
259-274
11
A:258-273
C:258-273
D:258-273
E:258-273
F:258-273
G:258-273
H:258-273
I:258-273
J:258-273
K:258-273
L:258-273
3
GLNA_ADENYLATION
PS00182
Glutamine synthetase class-I adenylation site.
GLN1B_SALTI
386-398
11
A:385-393
C:385-393
D:385-393
E:385-393
F:385-393
G:385-393
H:385-393
I:385-393
J:385-393
K:385-393
L:385-393
GLN1B_SALTY
386-398
11
A:385-393
C:385-393
D:385-393
E:385-393
F:385-393
G:385-393
H:385-393
I:385-393
J:385-393
K:385-393
L:385-393
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d2lgsa1 (A:1-100)
1b: SCOP_d2lgsb1 (B:1-100)
1c: SCOP_d2lgsc1 (C:1-100)
1d: SCOP_d2lgsd1 (D:1-100)
1e: SCOP_d2lgse1 (E:1-100)
1f: SCOP_d2lgsf1 (F:1-100)
1g: SCOP_d2lgsg1 (G:1-100)
1h: SCOP_d2lgsh1 (H:1-100)
1i: SCOP_d2lgsi1 (I:1-100)
1j: SCOP_d2lgsj1 (J:1-100)
1k: SCOP_d2lgsk1 (K:1-100)
1l: SCOP_d2lgsl1 (L:1-100)
2a: SCOP_d2lgsa2 (A:101-468)
2b: SCOP_d2lgsb2 (B:101-468)
2c: SCOP_d2lgsc2 (C:101-468)
2d: SCOP_d2lgsd2 (D:101-468)
2e: SCOP_d2lgse2 (E:101-468)
2f: SCOP_d2lgsf2 (F:101-468)
2g: SCOP_d2lgsg2 (G:101-468)
2h: SCOP_d2lgsh2 (H:101-468)
2i: SCOP_d2lgsi2 (I:101-468)
2j: SCOP_d2lgsj2 (J:101-468)
2k: SCOP_d2lgsk2 (K:101-468)
2l: SCOP_d2lgsl2 (L:101-468)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Glutamine synthetase, N-terminal domain
(20)
Family
:
Glutamine synthetase, N-terminal domain
(8)
Protein domain
:
Glutamine synthetase, N-terminal domain
(8)
Salmonella typhimurium [TaxId: 90371]
(6)
1a
d2lgsa1
A:1-100
1b
d2lgsb1
B:1-100
1c
d2lgsc1
C:1-100
1d
d2lgsd1
D:1-100
1e
d2lgse1
E:1-100
1f
d2lgsf1
F:1-100
1g
d2lgsg1
G:1-100
1h
d2lgsh1
H:1-100
1i
d2lgsi1
I:1-100
1j
d2lgsj1
J:1-100
1k
d2lgsk1
K:1-100
1l
d2lgsl1
L:1-100
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Glutamine synthetase catalytic domain
(8)
Protein domain
:
Glutamine synthetase, C-terminal domain
(8)
Salmonella typhimurium [TaxId: 90371]
(6)
2a
d2lgsa2
A:101-468
2b
d2lgsb2
B:101-468
2c
d2lgsc2
C:101-468
2d
d2lgsd2
D:101-468
2e
d2lgse2
E:101-468
2f
d2lgsf2
F:101-468
2g
d2lgsg2
G:101-468
2h
d2lgsh2
H:101-468
2i
d2lgsi2
I:101-468
2j
d2lgsj2
J:101-468
2k
d2lgsk2
K:101-468
2l
d2lgsl2
L:101-468
[
close SCOP info
]
CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_2lgsA01 (A:104-456)
1b: CATH_2lgsB02 (B:104-456)
1c: CATH_2lgsC02 (C:104-456)
1d: CATH_2lgsD02 (D:104-456)
1e: CATH_2lgsE02 (E:104-456)
1f: CATH_2lgsF02 (F:104-456)
1g: CATH_2lgsG02 (G:104-456)
1h: CATH_2lgsH02 (H:104-456)
1i: CATH_2lgsI02 (I:104-456)
1j: CATH_2lgsJ02 (J:104-456)
1k: CATH_2lgsK02 (K:104-456)
1l: CATH_2lgsL02 (L:104-456)
2a: CATH_2lgsA02 (A:1-103)
2b: CATH_2lgsB01 (B:1-103)
2c: CATH_2lgsC01 (C:1-103)
2d: CATH_2lgsD01 (D:1-103)
2e: CATH_2lgsE01 (E:1-103)
2f: CATH_2lgsF01 (F:1-103)
2g: CATH_2lgsG01 (G:1-103)
2h: CATH_2lgsH01 (H:1-103)
2i: CATH_2lgsI01 (I:1-103)
2j: CATH_2lgsJ01 (J:1-103)
2k: CATH_2lgsK01 (K:1-103)
2l: CATH_2lgsL01 (L:1-103)
View:
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Classes
(
)
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Creatine Kinase; Chain A, domain 2
(27)
Homologous Superfamily
:
Creatine Kinase; Chain
(27)
Salmonella typhimurium. Organism_taxid: 602
(3)
1a
2lgsA01
A:104-456
1b
2lgsB02
B:104-456
1c
2lgsC02
C:104-456
1d
2lgsD02
D:104-456
1e
2lgsE02
E:104-456
1f
2lgsF02
F:104-456
1g
2lgsG02
G:104-456
1h
2lgsH02
H:104-456
1i
2lgsI02
I:104-456
1j
2lgsJ02
J:104-456
1k
2lgsK02
K:104-456
1l
2lgsL02
L:104-456
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.70, no name defined]
(11)
Salmonella typhimurium. Organism_taxid: 602
(3)
2a
2lgsA02
A:1-103
2b
2lgsB01
B:1-103
2c
2lgsC01
C:1-103
2d
2lgsD01
D:1-103
2e
2lgsE01
E:1-103
2f
2lgsF01
F:1-103
2g
2lgsG01
G:1-103
2h
2lgsH01
H:1-103
2i
2lgsI01
I:1-103
2j
2lgsJ01
J:1-103
2k
2lgsK01
K:1-103
2l
2lgsL01
L:1-103
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