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2LGP
Asym. Unit
Info
Asym.Unit (442 KB)
Biol.Unit 1 (23 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF LA45 FROM LDLR
Authors
:
M. Guttman, E. A. Komives
Date
:
01 Aug 11 (Deposition) - 30 Nov 11 (Release) - 04 Jan 12 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Complement Repeat, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Guttman, E. A. Komives
The Structure, Dynamics, And Binding Of The La45 Module Pai Of The Low-Density Lipoprotein Receptor Suggest An Importan Role For La4 In Ligand Release.
Biochemistry V. 50 11001 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:144 , ASP A:147 , ASP A:149 , ASP A:151 , ASP A:157 , GLU A:158
BINDING SITE FOR RESIDUE CA A 215
2
AC2
SOFTWARE
TRP A:193 , ASP A:196 , GLY A:198 , ASP A:200 , ASP A:206 , GLU A:207
BINDING SITE FOR RESIDUE CA A 216
[
close Site info
]
SAPs(SNPs)/Variants
(34, 34)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_072829 (C127Y, chain A, )
02: VAR_005319 (C134G, chain A, )
03: VAR_072830 (C134Y, chain A, )
04: VAR_005320 (C139Y, chain A, )
05: VAR_072831 (D147A, chain A, )
06: VAR_005321 (D147H, chain A, )
07: VAR_005322 (D147N, chain A, )
08: VAR_005323 (D147Y, chain A, )
09: VAR_013950 (D151H, chain A, )
10: VAR_072832 (D151N, chain A, )
11: VAR_005324 (C152R, chain A, )
12: VAR_005325 (C152W, chain A, )
13: VAR_005326 (D154N, chain A, )
14: VAR_007981 (D154Y, chain A, )
15: VAR_005327 (S156L, chain A, )
16: VAR_072833 (C163W, chain A, )
17: VAR_013951 (C163Y, chain A, )
18: VAR_005328 (C176F, chain A, )
19: VAR_005330 (C176R, chain A, )
20: VAR_005329 (C176Y, chain A, )
21: VAR_065781 (E180K, chain A, )
22: VAR_072834 (H190L, chain A, )
23: VAR_005332 (D200G, chain A, )
24: VAR_007982 (D200N, chain A, )
25: VAR_005333 (D200Y, chain A, )
26: VAR_062373 (C201Y, chain A, )
27: VAR_005335 (D203G, chain A, )
28: VAR_005334 (D203N, chain A, )
29: VAR_005336 (D203V, chain A, )
30: VAR_005337 (S205P, chain A, )
31: VAR_005338 (D206E, chain A, )
32: VAR_005341 (E207K, chain A, )
33: VAR_005340 (E207Q, chain A, )
34: VAR_005342 (C210G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_072829
C
148
Y
LDLR_HUMAN
Disease (FH)
---
A
C
127
Y
02
UniProt
VAR_005319
C
155
G
LDLR_HUMAN
Unclassified
---
A
C
134
G
03
UniProt
VAR_072830
C
155
Y
LDLR_HUMAN
Disease (FH)
---
A
C
134
Y
04
UniProt
VAR_005320
C
160
Y
LDLR_HUMAN
Unclassified
---
A
C
139
Y
05
UniProt
VAR_072831
D
168
A
LDLR_HUMAN
Unclassified
---
A
D
147
A
06
UniProt
VAR_005321
D
168
H
LDLR_HUMAN
Disease (FH)
---
A
D
147
H
07
UniProt
VAR_005322
D
168
N
LDLR_HUMAN
Disease (FH)
---
A
D
147
N
08
UniProt
VAR_005323
D
168
Y
LDLR_HUMAN
Disease (FH)
---
A
D
147
Y
09
UniProt
VAR_013950
D
172
H
LDLR_HUMAN
Unclassified
---
A
D
151
H
10
UniProt
VAR_072832
D
172
N
LDLR_HUMAN
Disease (FH)
---
A
D
151
N
11
UniProt
VAR_005324
C
173
R
LDLR_HUMAN
Unclassified
---
A
C
152
R
12
UniProt
VAR_005325
C
173
W
LDLR_HUMAN
Disease (FH)
---
A
C
152
W
13
UniProt
VAR_005326
D
175
N
LDLR_HUMAN
Disease (FH)
---
A
D
154
N
14
UniProt
VAR_007981
D
175
Y
LDLR_HUMAN
Disease (FH)
---
A
D
154
Y
15
UniProt
VAR_005327
S
177
L
LDLR_HUMAN
Disease (FH)
---
A
S
156
L
16
UniProt
VAR_072833
C
184
W
LDLR_HUMAN
Disease (FH)
---
A
C
163
W
17
UniProt
VAR_013951
C
184
Y
LDLR_HUMAN
Disease (FH)
---
A
C
163
Y
18
UniProt
VAR_005328
C
197
F
LDLR_HUMAN
Unclassified
---
A
C
176
F
19
UniProt
VAR_005330
C
197
R
LDLR_HUMAN
Disease (FH)
---
A
C
176
R
20
UniProt
VAR_005329
C
197
Y
LDLR_HUMAN
Unclassified
---
A
C
176
Y
21
UniProt
VAR_065781
E
201
K
LDLR_HUMAN
Unclassified
---
A
E
180
K
22
UniProt
VAR_072834
H
211
L
LDLR_HUMAN
Unclassified
---
A
H
190
L
23
UniProt
VAR_005332
D
221
G
LDLR_HUMAN
Disease (FH)
---
A
D
200
G
24
UniProt
VAR_007982
D
221
N
LDLR_HUMAN
Disease (FH)
---
A
D
200
N
25
UniProt
VAR_005333
D
221
Y
LDLR_HUMAN
Disease (FH)
---
A
D
200
Y
26
UniProt
VAR_062373
C
222
Y
LDLR_HUMAN
Disease (FH)
---
A
C
201
Y
27
UniProt
VAR_005335
D
224
G
LDLR_HUMAN
Unclassified
---
A
D
203
G
28
UniProt
VAR_005334
D
224
N
LDLR_HUMAN
Unclassified
---
A
D
203
N
29
UniProt
VAR_005336
D
224
V
LDLR_HUMAN
Disease (FH)
---
A
D
203
V
30
UniProt
VAR_005337
S
226
P
LDLR_HUMAN
Unclassified
---
A
S
205
P
31
UniProt
VAR_005338
D
227
E
LDLR_HUMAN
Disease (FH)
---
A
D
206
E
32
UniProt
VAR_005341
E
228
K
LDLR_HUMAN
Disease (FH)
---
A
E
207
K
33
UniProt
VAR_005340
E
228
Q
LDLR_HUMAN
Unclassified
---
A
E
207
Q
34
UniProt
VAR_005342
C
231
G
LDLR_HUMAN
Disease (FH)
---
A
C
210
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 5)
Info
All PROSITE Patterns/Profiles
1: LDLRA_2 (-|-|-|A:126-164|A:175-211|A:214-21...)
2: LDLRA_1 (-|-|-|A:139-163|A:188-210|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LDLRA_2
PS50068
LDL-receptor class A (LDLRA) domain profile.
LDLR_HUMAN
26-64
67-105
108-144
147-185
196-232
235-271
275-314
3
-
-
-
A:126-164
A:175-211
A:214-214
-
2
LDLRA_1
PS01209
LDL-receptor class A (LDLRA) domain signature.
LDLR_HUMAN
39-63
82-104
121-143
160-184
209-231
248-270
289-313
2
-
-
-
A:139-163
A:188-210
-
-
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Asym.Unit (442 KB)
Header - Asym.Unit
Biol.Unit 1 (23 KB)
Header - Biol.Unit 1
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